Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015734m.g Citrus clementina HOM05D006652 ORTHO05D008645 1.5e-203 712.6 359 100.0
Atru.chr6.2810_Atru.chr6.2811 Acer truncatum HOM05D006652 ORTHO05D008645 4.5e-163 578.2 365 80.0
GSVIVG01020686001 Vitis vinifera HOM05D006652 ORTHO05D008645 1.0e-151 540.4 372 75.0
Dinv08786 Davidia involucrata HOM05D006652 ORTHO05D008645 5.7e-150 534.6 374 72.2
Peaxi162Scf00241g00812 Petunia axillaris HOM05D006652 ORTHO05D008645 4.1e-148 528.5 345 74.2
QL08p041412 Quercus lobata HOM05D006652 ORTHO05D008645 3.4e-147 525.4 361 74.0
vmacro09218 Vaccinium macrocarpon HOM05D006652 ORTHO05D008645 3.4e-147 525.4 323 78.3
TAR629G0548 Trochodendron aralioides HOM05D006652 ORTHO05D008645 8.5e-146 520.8 326 76.4
Potri.019G089700 Populus trichocarpa HOM05D006652 ORTHO05D008645 9.4e-145 517.3 352 73.3
CiPaw.03G187000 Carya illinoinensis HOM05D006652 ORTHO05D008645 1.6e-144 516.5 383 71.5
Sabra19G0100100 Salix brachista HOM05D006652 ORTHO05D008645 2.7e-144 515.8 364 72.0
Hma1.2p1_0166F.1_g073540 Hydrangea macrophylla HOM05D006652 ORTHO05D008645 4.6e-144 515.0 327 75.8
CSS0047332 Camellia sinensis var. sinensis HOM05D006652 ORTHO05D008645 6.1e-144 514.6 322 76.7
Sabra19G0103300 Salix brachista HOM05D006652 ORTHO05D008645 7.9e-144 514.2 364 71.7
Aqoxy4G00418 Aquilegia oxysepala HOM05D006652 ORTHO05D008645 5.1e-143 511.5 344 73.3
Ca_18890_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 5.1e-143 511.5 371 69.3
Thecc.01G148700 Theobroma cacao HOM05D006652 ORTHO05D008645 6.7e-143 511.1 372 69.4
Nitab4.5_0000822g0100 Nicotiana tabacum HOM05D006652 ORTHO05D008645 8.8e-143 510.8 322 77.0
Lj3g0009013 Lotus japonicus HOM05D006652 ORTHO05D008645 2.0e-142 509.6 334 74.9
CAN.G782.5 Capsicum annuum HOM05D006652 ORTHO05D008645 2.5e-142 509.2 342 73.7
HanXRQChr17g0558041 Helianthus annuus HOM05D006652 ORTHO05D008645 3.7e-141 505.4 369 69.1
Lj8C103T10 Lonicera japonica HOM05D006652 ORTHO05D008645 1.1e-140 503.8 324 77.5
Hund07829 Selenicereus undatus HOM05D006652 ORTHO05D008645 3.1e-140 502.3 371 69.8
Phvul.011G134400 Phaseolus vulgaris HOM05D006652 ORTHO05D008645 1.2e-139 500.4 374 67.6
Gohir.A10G153800 Gossypium hirsutum HOM05D006652 ORTHO05D008645 1.5e-139 500.0 364 69.2
Solyc10g008020.3 Solanum lycopersicum HOM05D006652 ORTHO05D008645 1.5e-139 500.0 322 75.2
Glyma.12G122700 Glycine max HOM05D006652 ORTHO05D008645 2.0e-139 499.6 374 66.8
Gohir.D10G112300 Gossypium hirsutum HOM05D006652 ORTHO05D008645 2.0e-139 499.6 364 69.2
Gorai.011G124200 Gossypium raimondii HOM05D006652 ORTHO05D008645 2.0e-139 499.6 364 69.2
COL.COLO4_33547 Corchorus olitorius HOM05D006652 ORTHO05D008645 3.4e-139 498.8 376 66.8
Nn1g04382 Nelumbo nucifera HOM05D006652 ORTHO05D008645 7.7e-139 497.7 364 68.1
Sopen10g003890 Solanum pennellii HOM05D006652 ORTHO05D008645 7.7e-139 497.7 322 74.8
Lsat_1_v5_gn_8_140221 Lactuca sativa HOM05D006652 ORTHO05D008645 2.2e-138 496.1 349 70.2
arahy.Tifrunner.gnm1.ann1.KP1SVS Arachis hypogaea HOM05D006652 ORTHO05D008645 5.0e-138 495.0 351 70.9
Medtr4g079750 Medicago truncatula HOM05D006652 ORTHO05D008645 5.0e-138 495.0 328 73.2
EL10Ac9g20915 Beta vulgaris HOM05D006652 ORTHO05D008645 1.4e-137 493.4 365 68.8
Lalb_Chr19g0134921 Lupinus albus HOM05D006652 ORTHO05D008645 2.5e-137 492.7 369 66.9
AUR62038922 Chenopodium quinoa HOM05D006652 ORTHO05D008645 3.2e-137 492.3 343 70.8
arahy.Tifrunner.gnm1.ann1.5ZDL5Q Arachis hypogaea HOM05D006652 ORTHO05D008645 5.5e-137 491.5 351 70.4
ECA234G1589 Erigeron canadensis HOM05D006652 ORTHO05D008645 7.2e-137 491.1 323 74.0
Migut.H02157 Erythranthe guttata HOM05D006652 ORTHO05D008645 9.4e-137 490.7 323 74.0
Eucgr.K01102 Eucalyptus grandis HOM05D006652 ORTHO05D008645 2.7e-136 489.2 371 67.9
Glyma.06G283400 Glycine max HOM05D006652 ORTHO05D008645 4.7e-136 488.4 373 66.2
Nitab4.5_0008146g0020 Nicotiana tabacum HOM05D006652 ORTHO05D008645 1.8e-135 486.5 368 67.1
MSTRG.14312 Avicennia marina HOM05D006652 ORTHO05D008645 3.0e-135 485.7 332 71.4
VMungo1127G0176 Vigna mungo HOM05D006652 ORTHO05D008645 2.0e-134 483.0 374 65.2
PGR142G2816 Punica granatum HOM05D006652 ORTHO05D008645 7.4e-134 481.1 365 66.6
SalBow7G3656 Salvia bowleyana HOM05D006652 ORTHO05D008645 1.3e-133 480.3 353 67.7
Duzib187G0644 Durio zibethinus HOM05D006652 ORTHO05D008645 2.2e-133 479.6 353 68.0
unitig_21.g20276 Utricularia gibba HOM05D006652 ORTHO05D008645 2.0e-131 473.0 338 68.6
CsaV3_6G018460 Cucumis sativus L. HOM05D006652 ORTHO05D008645 2.6e-131 472.6 364 64.0
Glyma.06G283600 Glycine max HOM05D006652 ORTHO05D008645 3.5e-131 472.2 375 62.9
ATR0661G163 Amborella trichopoda HOM05D006652 ORTHO05D008645 3.2e-129 465.7 343 67.3
PGSC0003DMG400010544 Solanum tuberosum HOM05D006652 ORTHO05D008645 1.8e-127 459.9 385 62.3
Os10g0181600 Oryza sativa ssp. japonica HOM05D006652 ORTHO05D008645 2.0e-126 456.4 322 68.6
Zm00001eb223890 Zea mays HOM05D006652 ORTHO05D008645 9.7e-126 454.1 340 66.8
MBI11_g14404_MAGBIO Magnolia biondii HOM05D006652 ORTHO05D008645 1.8e-124 449.9 360 65.8
SGA_v2.0_scaffold109G31132 Striga asiatica HOM05D006652 ORTHO05D008645 3.5e-123 445.7 438 55.7
Actinidia39342 Actinidia chinensis HOM05D006652 ORTHO05D008645 7.7e-123 444.5 279 77.4
Cc05_g08190 Coffea canephora HOM05D006652 ORTHO05D008645 7.5e-118 427.9 301 69.8
TWI59G0297 Tripterygium wilfordii HOM05D006652 ORTHO05D008645 2.8e-117 426.0 291 73.2
Cc05_g08160 Coffea canephora HOM05D006652 ORTHO05D008645 4.8e-117 425.2 299 69.9
Rhsim04G0074100 Rhododendron simsii HOM05D006652 ORTHO05D008645 3.1e-116 422.5 330 65.2
Manes.13G137800 Manihot esculenta HOM05D006652 ORTHO05D008645 4.5e-115 418.7 305 68.2
AUR62038997 Chenopodium quinoa HOM05D006652 ORTHO05D008645 3.0e-111 406.0 357 60.5
Psat7g166280 Pisum sativum HOM05D006652 ORTHO05D008645 1.5e-110 403.7 307 67.4
Pp3c3_7460 Physcomitrium patens HOM05D006652 ORTHO05D008645 4.5e-107 392.1 356 56.2
Sed0018596 Sechium edule HOM05D006652 ORTHO05D008645 6.6e-106 388.3 276 68.1
Glyma.06G283500 Glycine max HOM05D006652 ORTHO05D008645 1.0e-103 380.9 292 64.7
SMO334G0043 Selaginella moellendorffii HOM05D006652 ORTHO05D008645 2.3e-103 379.8 324 57.7
CDE11G0921 Ceratophyllum demersum HOM05D006652 ORTHO05D008645 4.0e-103 379.0 264 69.3
DCAR_013062 Daucus carota HOM05D006652 ORTHO05D008645 6.1e-96 355.1 333 59.2
Mapoly0061s0036 Marchantia polymorpha HOM05D006652 ORTHO05D008645 3.4e-94 349.4 326 51.2
ClCG02G017930 Citrullus lanatus HOM05D006652 ORTHO05D008645 8.0e-88 328.2 363 51.8
MBI11_g19676_MAGBIO Magnolia biondii HOM05D006652 ORTHO05D008645 7.5e-86 321.6 277 60.6
Cc00_g35820 Coffea canephora HOM05D006652 ORTHO05D008645 1.9e-81 307.0 212 69.8
CBR_g20425 Chara braunii HOM05D006652 ORTHO05D008645 9.5e-81 304.7 358 45.5
MCO11G400 Micromonas commoda HOM05D006652 ORTHO05D008645 4.6e-75 285.8 345 45.5
TPR.G21861 Trifolium pratense HOM05D006652 ORTHO05D008645 1.9e-73 280.4 234 63.2
Ca_18889_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 4.3e-73 279.3 190 72.6
AagrBONN_evm.TU.Sc2ySwM_228.444 Anthoceros agrestis HOM05D006652 ORTHO05D008645 1.3e-69 267.7 234 60.7
MELO3C019759.2 Cucumis melo HOM05D006652 ORTHO05D008645 2.2e-69 266.9 220 61.4
PRCOL_00002204 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 2.9e-69 266.5 319 45.1
Zm00001eb307930 Zea mays HOM05D006652 ORTHO05D008645 4.6e-67 259.2 202 60.9
CBR_g20426 Chara braunii HOM05D006652 ORTHO05D008645 8.7e-66 255.0 399 40.1
PGR142G0648 Punica granatum HOM05D006652 ORTHO05D008645 4.0e-63 246.1 211 58.3
Zm00001eb155780 Zea mays HOM05D006652 ORTHO05D008645 5.6e-57 225.7 245 50.6
Cre03.g200350 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D008645 2.8e-56 223.4 338 38.8
Zm00001eb202810 Zea mays HOM05D006652 ORTHO05D008645 3.6e-56 223.0 253 48.6
Mapoly0285s0004 Marchantia polymorpha HOM05D006652 ORTHO05D008645 3.4e-54 216.5 220 50.9
Zm00001eb127120 Zea mays HOM05D006652 ORTHO05D008645 1.2e-51 208.0 250 46.8
Pp3c17_23540 Physcomitrium patens HOM05D006652 ORTHO05D008645 1.8e-50 204.1 333 37.2
SMO118G0546 Selaginella moellendorffii HOM05D006652 ORTHO05D008645 5.1e-50 202.6 303 37.0
Cre06.g259401 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D008645 2.5e-49 200.3 305 37.7
Mapoly0050s0024 Marchantia polymorpha HOM05D006652 ORTHO05D008645 1.8e-47 194.1 359 33.1
SEGI_35274 Sequoiadendron giganteum HOM05D006652 ORTHO05D008645 1.8e-47 194.1 349 35.5
Haze_13351 Corylus avellana HOM05D006652 ORTHO05D008645 3.4e-46 189.9 120 75.0
CBR_g34298 Chara braunii HOM05D006652 ORTHO05D008645 5.5e-44 182.6 345 34.2
Ca_18891_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 3.5e-43 179.9 147 64.6
arahy.Tifrunner.gnm1.ann1.MYHL2J Arachis hypogaea HOM05D006652 ORTHO05D008645 1.0e-42 178.3 143 62.2
PRCOL_00006996 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 1.8e-39 167.5 321 35.2
ECA234G0151 Erigeron canadensis HOM05D006652 ORTHO05D008645 1.0e-37 161.8 101 72.3
Haze_13350 Corylus avellana HOM05D006652 ORTHO05D008645 1.1e-36 158.3 94 79.8
Zm00001eb272210 Zea mays HOM05D006652 ORTHO05D008645 1.4e-36 157.9 200 47.0
MCO08G076 Micromonas commoda HOM05D006652 ORTHO05D008645 9.3e-36 155.2 318 30.5
TPR.G21859 Trifolium pratense HOM05D006652 ORTHO05D008645 5.0e-29 132.9 138 50.0
AUR62024835 Chenopodium quinoa HOM05D006652 ORTHO05D008645 8.5e-29 132.1 160 45.6
TPR.G21704 Trifolium pratense HOM05D006652 ORTHO05D008645 1.2e-27 128.3 123 54.5
AagrBONN_evm.TU.Sc2ySwM_117.2543 Anthoceros agrestis HOM05D006652 ORTHO05D008645 6.1e-27 125.9 172 41.3
Glyma.12G122501 Glycine max HOM05D006652 ORTHO05D008645 1.4e-18 98.2 87 56.3
Cc05_g08180 Coffea canephora HOM05D006652 ORTHO05D008645 1.1e-17 95.1 56 83.9
Cc05_g08150 Coffea canephora HOM05D006652 ORTHO05D008645 5.7e-17 92.8 56 82.1
PRCOL_00001996 Prasinoderma coloniale HOM05D006652 ORTHO05D028803 1.8e-15 87.8 247 28.7
MCO15G420 Micromonas commoda HOM05D006652 ORTHO05D028803 1.3e-13 81.6 261 27.6
Haze_13352 Corylus avellana HOM05D006652 ORTHO05D008645 1.7e-13 81.3 137 41.6
Ah.07g202300 Amaranthus hybridus HOM05D006652 ORTHO05D008645 2.9e-13 80.5 93 52.7
Cre06.g286350 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D028803 8.5e-13 79.0 244 26.6
Ah.08g222620 Amaranthus hybridus HOM05D006652 ORTHO05D008645 4.2e-12 76.6 92 47.8
MCO09G339 Micromonas commoda HOM05D006652 ORTHO05D268879 7.2e-12 75.9 232 28.9
PRCOL_00002129 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 3.6e-11 73.6 229 28.8
Cre06.g286300 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D028803 1.8e-10 71.2 245 24.9
Zm00001eb048070 Zea mays HOM05D001272 ORTHO05D001099 8.8e-10 68.9 44 72.7
Sopen12g009240 Solanum pennellii HOM05D005748 ORTHO05D007123 1.4e-07 61.6 129 34.1
CAN.G8.38 Capsicum annuum HOM05D005748 ORTHO05D007123 5.3e-07 59.7 128 32.8
PGSC0003DMG400020380 Solanum tuberosum HOM05D005748 ORTHO05D007123 5.3e-07 59.7 129 34.1
BcaB03g11936 Brassica carinata HOM05D005748 ORTHO05D007123 1.6e-06 58.2 108 32.4
SMO358G0637 Selaginella moellendorffii HOM05D005748 ORTHO05D007123 2.0e-06 57.8 109 37.6
Peaxi162Scf00057g02525 Petunia axillaris HOM05D005748 ORTHO05D007123 2.6e-06 57.4 129 31.8
Solyc12g019010.2 Solanum lycopersicum HOM05D005748 ORTHO05D007123 2.6e-06 57.4 129 31.8
Nitab4.5_0000160g0130 Nicotiana tabacum HOM05D005748 ORTHO05D007123 4.5e-06 56.6 124 32.3
Cc11_g15440 Coffea canephora HOM05D005748 ORTHO05D007123 7.7e-06 55.8 109 30.3


User provided reference genes

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