Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 1.4e-223 779.2 376 100.0
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 5.9e-166 587.8 374 73.3
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 1.6e-163 579.7 379 72.8
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 1.2e-161 573.5 372 74.2
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 1.6e-158 563.1 369 72.1
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 2.0e-158 562.8 380 71.3
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 1.0e-157 560.5 374 72.2
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 5.0e-157 558.1 374 71.9
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 5.0e-157 558.1 379 69.4
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 6.5e-157 557.8 375 69.9
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 1.9e-156 556.2 381 70.6
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 2.5e-156 555.8 400 68.0
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 5.5e-156 554.7 375 69.3
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 3.6e-155 552.0 379 68.9
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 4.7e-155 551.6 375 68.8
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 6.1e-155 551.2 374 70.3
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 3.0e-154 548.9 371 71.2
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 6.8e-154 547.7 376 70.2
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 5.7e-153 544.7 372 70.2
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 7.5e-153 544.3 378 69.8
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 8.3e-152 540.8 377 69.2
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 1.8e-151 539.7 372 69.9
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 4.1e-151 538.5 371 68.5
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 5.4e-151 538.1 377 68.7
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 7.0e-151 537.7 377 70.3
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 7.0e-151 537.7 377 69.0
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 2.0e-150 536.2 374 69.5
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.5e-150 535.4 378 69.0
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 5.9e-150 534.6 377 69.8
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 7.7e-150 534.3 372 68.0
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 1.7e-149 533.1 377 68.7
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 3.8e-149 531.9 375 68.3
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 6.6e-149 531.2 377 67.6
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 9.5e-148 527.3 374 65.8
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 1.6e-147 526.6 375 67.2
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 1.4e-146 523.5 377 63.4
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 4.0e-146 521.9 374 66.3
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 6.8e-146 521.2 378 66.1
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 8.9e-146 520.8 374 65.8
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 1.5e-145 520.0 374 65.5
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 2.0e-145 519.6 376 67.6
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 2.6e-145 519.2 381 66.7
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 5.7e-145 518.1 372 64.5
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 9.8e-145 517.3 373 67.6
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 1.3e-144 516.9 377 65.3
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 3.7e-144 515.4 379 66.5
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 3.7e-144 515.4 381 65.6
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 1.4e-143 513.5 372 66.9
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 4.1e-143 511.9 374 67.4
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 7.0e-143 511.1 349 70.5
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 1.3e-141 506.9 372 64.8
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 1.7e-141 506.5 374 65.5
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 5.0e-141 505.0 370 65.9
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 1.9e-140 503.1 372 65.6
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 4.7e-139 498.4 369 65.3
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 6.1e-139 498.0 371 66.0
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.8e-138 496.5 372 65.1
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 3.1e-138 495.7 400 62.8
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 4.0e-138 495.4 377 65.3
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.2e-137 493.8 367 64.6
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 2.0e-137 493.0 375 63.2
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.3e-136 490.3 361 65.9
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 2.9e-136 489.2 374 63.1
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.0e-133 480.7 361 64.8
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 1.0e-133 480.7 375 62.9
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 6.6e-133 478.0 380 61.8
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 1.9e-132 476.5 372 61.6
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 4.3e-132 475.3 383 62.9
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 2.1e-131 473.0 375 61.3
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 2.8e-131 472.6 379 61.7
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 2.0e-129 466.5 375 60.3
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 2.1e-126 456.4 375 59.5
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 2.7e-126 456.1 367 61.3
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 3.9e-125 452.2 379 59.6
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 8.6e-125 451.1 370 60.8
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 5.2e-122 441.8 373 59.2
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 2.6e-121 439.5 372 56.2
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 6.0e-118 428.3 367 58.3
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 3.5e-110 402.5 249 74.7
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 1.9e-100 370.2 388 51.3
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 1.8e-98 363.6 375 48.3
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 5.3e-98 362.1 317 56.8
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 4.9e-96 355.5 404 48.3
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 1.0e-88 331.3 356 52.0
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 3.5e-86 322.8 186 79.6
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 2.6e-81 306.6 299 51.2
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 2.1e-78 297.0 383 41.0
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 3.9e-77 292.7 368 42.7
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 2.5e-76 290.0 187 75.9
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 2.6e-73 280.0 223 63.2
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 3.1e-66 256.5 208 62.0
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 5.0e-64 249.2 316 41.1
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 5.0e-64 249.2 208 61.1
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 7.2e-63 245.4 148 75.0
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 6.1e-62 242.3 184 65.2
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 8.8e-61 238.4 372 34.9
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 5.7e-60 235.7 220 55.0
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 1.3e-59 234.6 407 36.4
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 2.8e-59 233.4 248 49.2
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 9.1e-58 228.4 251 50.2
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 8.0e-54 215.3 198 57.6
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 1.1e-52 211.5 188 56.9
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 4.4e-52 209.5 213 55.9
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 4.4e-52 209.5 213 55.9
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 4.0e-45 186.4 125 68.0
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 1.3e-43 181.4 149 59.1
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 8.3e-43 178.7 147 61.2
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 2.7e-41 173.7 101 78.2
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 1.1e-39 168.3 124 63.7
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 1.2e-38 164.9 149 59.1
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 1.8e-34 151.0 141 56.0
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 3.1e-34 150.2 173 46.8
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 5.4e-34 149.4 270 38.1
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 3.0e-24 117.1 349 26.6
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 5.2e-21 106.3 72 68.1
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 2.6e-20 104.0 100 48.0
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 6.4e-19 99.4 98 54.1
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 4.1e-18 96.7 346 25.1
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 5.4e-18 96.3 162 40.7
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 7.0e-18 95.9 73 64.4
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 7.0e-18 95.9 103 56.3
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 1.5e-15 88.2 75 56.0
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 2.1e-14 84.3 190 35.8
arahy.Tifrunner.gnm1.ann1.IN0C4L Arachis hypogaea HOM05D006665 ORTHO05D012122 2.5e-07 60.8 105 41.0
QL02p004496 Quercus lobata HOM05D002332 ORTHO05D002509 9.5e-07 58.9 333 20.4
QL06p048778 Quercus lobata HOM05D002332 ORTHO05D002509 9.5e-07 58.9 333 20.4


User provided reference genes

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