Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.1e-220 769.6 388 100.0
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 4.1e-170 601.7 397 77.6
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 7.0e-170 600.9 386 78.8
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 8.0e-166 587.4 369 79.9
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.8e-165 586.3 386 76.9
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.1e-164 583.6 394 75.4
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 4.4e-164 581.6 420 71.7
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.1e-162 577.0 396 74.7
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 1.4e-162 576.6 420 71.4
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.2e-161 573.5 403 74.4
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 1.6e-161 573.2 390 75.6
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 2.0e-161 572.8 396 74.2
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 2.6e-161 572.4 372 77.2
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 2.6e-161 572.4 396 73.2
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.0e-160 570.5 379 76.3
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 3.8e-160 568.5 392 75.5
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.5e-159 566.6 391 74.9
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 2.5e-159 565.8 391 74.7
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 2.5e-159 565.8 411 72.7
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.6e-158 563.1 395 72.7
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 2.7e-158 562.4 374 77.0
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 3.6e-158 562.0 366 77.0
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 4.7e-158 561.6 378 75.4
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 4.0e-157 558.5 368 76.1
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.5e-156 556.6 405 71.9
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 2.0e-156 556.2 405 72.3
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.6e-156 555.8 400 72.5
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 1.7e-155 553.1 371 76.0
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 1.1e-154 550.4 368 75.0
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.8e-154 549.7 368 75.0
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 4.5e-153 545.0 388 72.7
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 7.7e-153 544.3 388 71.6
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.0e-152 543.9 388 72.2
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.1e-151 540.4 391 71.6
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.5e-151 540.0 392 72.7
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.5e-151 540.0 420 67.4
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.5e-151 539.3 391 72.4
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 3.2e-151 538.9 416 68.0
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 7.2e-151 537.7 373 72.1
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 1.0e-149 533.9 390 71.5
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.0e-149 533.9 388 70.4
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 4.4e-148 528.5 388 69.6
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 5.7e-148 528.1 386 69.2
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 5.7e-148 528.1 386 69.2
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 2.2e-147 526.2 368 73.1
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 3.5e-145 518.8 359 72.4
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 5.9e-145 518.1 378 69.6
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 5.9e-145 518.1 287 87.5
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 7.7e-145 517.7 391 68.8
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.0e-144 517.3 372 69.9
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 1.7e-144 516.5 398 67.8
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 5.0e-144 515.0 380 70.0
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 8.6e-144 514.2 391 68.5
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.5e-143 513.5 393 67.9
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.5e-143 513.5 368 71.2
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 3.3e-143 512.3 392 67.9
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 5.5e-143 511.5 394 68.5
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 7.2e-143 511.1 383 67.9
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.2e-142 510.4 390 67.9
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 4.7e-142 508.4 287 85.7
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.0e-141 507.3 364 69.2
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 2.3e-141 506.1 402 65.9
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 4.0e-141 505.4 364 70.9
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 5.2e-141 505.0 366 68.9
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 5.2e-141 505.0 365 71.5
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 5.2e-141 505.0 365 71.5
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 4.4e-140 501.9 368 70.1
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 9.8e-140 500.7 393 68.4
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.3e-139 500.4 395 67.1
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.4e-138 496.9 366 68.6
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.8e-138 496.5 405 64.2
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 2.4e-138 496.1 373 67.6
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 7.0e-138 494.6 386 65.8
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.2e-137 493.8 287 82.6
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 1.6e-137 493.4 394 67.0
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.0e-137 493.0 384 66.7
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 4.5e-137 491.9 400 63.8
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 4.5e-137 491.9 295 80.3
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 3.8e-136 488.8 318 75.2
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 4.3e-135 485.3 390 64.9
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 1.6e-134 483.4 386 64.5
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.1e-134 483.0 377 67.4
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 1.8e-133 479.9 396 63.4
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 4.0e-133 478.8 399 62.2
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 3.4e-132 475.7 385 65.2
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 9.8e-132 474.2 369 65.6
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.3e-131 473.8 398 62.8
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 3.7e-131 472.2 359 67.4
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 4.1e-130 468.8 388 64.7
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 1.1e-127 460.7 388 63.4
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.9e-127 459.9 380 62.6
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 7.3e-127 458.0 358 67.3
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.4e-125 453.8 384 61.2
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.3e-125 453.0 396 61.4
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.1e-125 452.6 340 68.8
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 1.2e-124 450.7 287 79.1
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 3.4e-124 449.1 390 62.8
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.8e-124 448.4 394 61.2
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.7e-123 446.8 366 64.2
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.1e-122 444.1 392 59.7
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.9e-122 443.4 396 60.4
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 4.1e-122 442.2 380 62.4
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 7.0e-122 441.4 391 60.9
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.2e-121 440.7 390 60.8
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.1e-121 439.9 371 63.6
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 3.5e-121 439.1 387 62.3
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 4.6e-121 438.7 369 63.4
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.6e-121 438.7 337 67.4
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 6.0e-121 438.3 377 62.3
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.0e-120 437.6 394 60.2
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.3e-120 437.2 380 60.8
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.0e-120 436.0 507 49.9
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.9e-120 435.6 381 62.2
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 6.6e-120 434.9 387 62.0
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 4.7e-118 428.7 390 62.1
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 6.2e-118 428.3 350 64.3
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 3.1e-117 426.0 373 56.6
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 8.9e-117 424.5 365 59.5
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.0e-116 423.3 362 61.9
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 3.4e-116 422.5 383 60.8
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 3.4e-116 422.5 362 61.6
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.3e-115 420.6 290 65.9
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.7e-115 420.2 362 61.3
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 4.9e-115 418.7 369 60.7
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 5.4e-114 415.2 353 61.8
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 6.0e-113 411.8 372 60.2
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 6.0e-113 411.8 287 73.5
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 7.8e-113 411.4 383 59.8
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 7.8e-113 411.4 386 59.8
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 7.8e-113 411.4 386 59.8
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 7.8e-113 411.4 383 59.8
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.3e-112 409.8 293 72.4
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.5e-111 407.1 386 59.3
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.9e-111 406.8 363 57.3
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 7.6e-108 394.8 379 59.1
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 9.9e-100 367.9 363 53.4
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 8.1e-94 348.2 415 47.0
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.0e-92 343.6 251 68.9
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 9.3e-82 308.1 169 87.0
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 5.1e-56 222.6 290 41.0
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 5.7e-55 219.2 293 42.0
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 9.7e-55 218.4 171 64.9
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 5.3e-53 212.6 259 48.3
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-52 211.5 160 66.2
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.0e-43 181.8 248 47.6
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 7.2e-34 149.1 189 45.5
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 1.2e-28 131.7 72 84.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 5.5e-26 122.9 173 46.2
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 7.2e-26 122.5 138 53.6
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.2e-23 115.2 99 63.6
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 3.3e-18 97.1 279 26.9
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 3.3e-18 97.1 116 51.7
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 5.4e-13 79.7 56 67.9


User provided reference genes

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