Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015548m.g Citrus clementina HOM05D008798 ORTHO05D011016 1.4e-223 779.2 390 100.0
Atru.chr5.2787 Acer truncatum HOM05D008798 ORTHO05D011016 5.6e-135 485.0 387 64.1
Duzib160G0760 Durio zibethinus HOM05D008798 ORTHO05D011016 2.7e-129 466.1 390 59.0
Gorai.011G050900 Gossypium raimondii HOM05D008798 ORTHO05D011016 3.0e-128 462.6 387 59.2
Gohir.D10G047800 Gossypium hirsutum HOM05D008798 ORTHO05D011016 1.9e-127 459.9 387 58.9
Potri.001G081100 Populus trichocarpa HOM05D008798 ORTHO05D011016 4.7e-126 455.3 388 58.8
Potri.003G149300 Populus trichocarpa HOM05D008798 ORTHO05D011016 4.0e-125 452.2 386 58.0
Gohir.A10G046500 Gossypium hirsutum HOM05D008798 ORTHO05D011016 1.9e-122 443.4 393 56.2
Cfa000742 Carpinus fangiana HOM05D008798 ORTHO05D011016 7.1e-122 441.4 374 57.5
CiPaw.09G150900 Carya illinoinensis HOM05D008798 ORTHO05D011016 7.1e-122 441.4 392 55.6
GSVIVG01013644001 Vitis vinifera HOM05D008798 ORTHO05D011016 4.6e-121 438.7 386 55.7
Manes.16G054300 Manihot esculenta HOM05D008798 ORTHO05D011016 5.1e-120 435.3 393 57.3
TWI09G1085 Tripterygium wilfordii HOM05D008798 ORTHO05D011016 1.1e-119 434.1 372 59.4
Dinv15940 Davidia involucrata HOM05D008798 ORTHO05D011016 4.3e-119 432.2 398 56.3
TAR626G1932 Trochodendron aralioides HOM05D008798 ORTHO05D011016 9.0e-117 424.5 389 55.8
Eucgr.E04362 Eucalyptus grandis HOM05D008798 ORTHO05D011016 2.8e-110 402.9 370 53.5
Eucgr.E02024 Eucalyptus grandis HOM05D008798 ORTHO05D011016 4.8e-110 402.1 370 53.5
Dinv15941 Davidia involucrata HOM05D008798 ORTHO05D011016 7.9e-105 384.8 397 51.9
CSS0041632 Camellia sinensis var. sinensis HOM05D008798 ORTHO05D011016 1.1e-103 380.9 398 51.8
DCAR_003802 Daucus carota HOM05D008798 ORTHO05D011016 2.7e-97 359.8 380 49.2
Rhsim13G0127600 Rhododendron simsii HOM05D008798 ORTHO05D011016 1.6e-94 350.5 418 48.6
vmacro03488 Vaccinium macrocarpon HOM05D008798 ORTHO05D011016 6.5e-91 338.6 401 48.4
Thecc.06G136100 Theobroma cacao HOM05D008798 ORTHO05D011016 1.5e-87 327.4 258 62.4
HPP92_012287 Vanilla planifolia HOM05D006462 ORTHO05D008067 1.9e-82 310.5 354 45.5
Zm00001eb213680 Zea mays HOM05D008798 ORTHO05D011016 3.0e-64 250.0 350 40.6
ATR0763G057 Amborella trichopoda HOM05D008798 ORTHO05D011016 9.1e-61 238.4 259 47.9
SEGI_41343 Sequoiadendron giganteum HOM05D008798 ORTHO05D011016 1.6e-60 237.7 345 37.4
Hma1.2p1_1159F.1_g262420 Hydrangea macrophylla HOM05D008798 ORTHO05D011016 4.5e-60 236.1 229 57.6
Os03g0777600 Oryza sativa ssp. japonica HOM05D008798 ORTHO05D011016 3.4e-47 193.4 284 35.6
Zm00001eb123420 Zea mays HOM05D008798 ORTHO05D011016 1.8e-40 171.0 201 42.3
Pp3c9_15430 Physcomitrium patens HOM05D008798 ORTHO05D011016 4.1e-37 159.8 378 29.9
Pp3c9_12300 Physcomitrium patens HOM05D008798 ORTHO05D011016 1.9e-34 151.0 377 30.8
SMO367G1240 Selaginella moellendorffii HOM05D009232 ORTHO05D013348 4.7e-33 146.4 364 29.9
Mapoly0044s0079 Marchantia polymorpha HOM05D008798 ORTHO05D011016 2.0e-31 141.0 416 27.6
Haze_05996 Corylus avellana HOM05D008798 ORTHO05D011016 3.4e-31 140.2 142 54.9
AagrBONN_evm.TU.Sc2ySwM_344.179 Anthoceros agrestis HOM05D008798 ORTHO05D011016 4.9e-30 136.3 301 29.2
Haze_05995 Corylus avellana HOM05D008798 ORTHO05D011016 1.9e-26 124.4 87 66.7
Pp3c23_9830 Physcomitrium patens HOM05D008798 ORTHO05D011016 5.2e-24 116.3 355 23.7
Pp3c20_17720 Physcomitrium patens HOM05D008798 ORTHO05D011016 2.0e-23 114.4 354 23.7
Zm00001eb431530 Zea mays HOM05D008798 ORTHO05D011016 2.6e-15 87.4 108 41.7
CBR_g6349 Chara braunii HOM05D000186 ORTHO05D000347 3.4e-15 87.0 273 25.3
SEGI_25661 Sequoiadendron giganteum HOM05D008798 ORTHO05D011016 6.4e-14 82.8 108 40.7
MBI01_g35739_MAGBIO Magnolia biondii HOM05D008798 ORTHO05D000004 5.1e-11 73.2 56 53.6
ATR0168G001 Amborella trichopoda HOM05D008798 ORTHO05D011016 4.9e-06 56.6 76 40.8
COL.COLO4_13976 Corchorus olitorius HOM05D000488 ORTHO05D000347 4.9e-06 56.6 297 22.6


User provided reference genes

Program Settings