Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015543m.g Citrus clementina HOM05D005998 ORTHO05D007664 1.5e-167 593.2 391 100.0
Atru.chr6.3489 Acer truncatum HOM05D005998 ORTHO05D007664 6.4e-115 418.3 385 78.7
Thecc.01G205300 Theobroma cacao HOM05D005998 ORTHO05D007664 1.3e-94 350.9 387 68.7
Manes.13G057500 Manihot esculenta HOM05D005998 ORTHO05D007664 8.2e-94 348.2 387 72.1
Gohir.D11G153100 Gossypium hirsutum HOM05D005998 ORTHO05D007664 1.1e-93 347.8 387 68.7
Gorai.007G162000 Gossypium raimondii HOM05D005998 ORTHO05D007664 1.1e-93 347.8 387 68.7
Lj2A1109T75 Lonicera japonica HOM05D005998 ORTHO05D007664 5.3e-93 345.5 387 54.8
TWI75G0247 Tripterygium wilfordii HOM05D005998 ORTHO05D007664 5.3e-93 345.5 387 64.9
COL.COLO4_29925 Corchorus olitorius HOM05D005998 ORTHO05D007664 3.4e-92 342.8 381 68.5
Gohir.A11G144800 Gossypium hirsutum HOM05D005998 ORTHO05D007664 7.7e-92 341.7 387 68.2
QL09p045684 Quercus lobata HOM05D005998 ORTHO05D007664 4.2e-90 335.9 388 66.2
Prupe.8G184400 Prunus persica HOM05D005998 ORTHO05D007664 5.5e-90 335.5 383 68.9
CANSAT25G0419 Cannabis sativa HOM05D005998 ORTHO05D007664 1.5e-87 327.4 381 66.1
AT3G07550 Arabidopsis thaliana HOM05D005998 ORTHO05D007664 2.0e-87 327.0 384 64.6
RcHm_v2.0_Chr6g0281791 Rosa chinensis HOM05D005998 ORTHO05D007664 2.5e-87 326.6 375 72.3
TAR362G0769 Trochodendron aralioides HOM05D005998 ORTHO05D007664 5.7e-87 325.5 389 70.2
Actinidia23131 Actinidia chinensis HOM05D005998 ORTHO05D007664 2.8e-86 323.2 380 65.8
AL3G18890 Arabidopsis lyrata HOM05D005998 ORTHO05D007664 4.1e-85 319.3 383 64.5
Thhalv10020882m.g Eutrema salsugineum HOM05D005998 ORTHO05D007664 6.9e-85 318.5 383 64.5
Sp3g06470 Schrenkiella parvula HOM05D005998 ORTHO05D007664 1.2e-84 317.8 383 64.0
BraA05t22797Z Brassica rapa HOM05D005998 ORTHO05D007664 1.4e-82 310.8 384 56.8
PGR083G1807 Punica granatum HOM05D005998 ORTHO05D007664 1.4e-82 310.8 381 66.1
Carub.0003s0710 Capsella rubella HOM05D005998 ORTHO05D007664 9.4e-82 308.1 383 62.9
MD05G1151800 Malus domestica HOM05D005998 ORTHO05D007664 1.6e-81 307.4 381 65.4
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 6.7e-80 302.0 378 48.4
Cpa.g.sc8.24 Carica papaya HOM05D005998 ORTHO05D007664 2.0e-79 300.4 371 62.8
THA.LOC104819025 Tarenaya hassleriana HOM05D005998 ORTHO05D007664 2.0e-79 300.4 387 63.6
C05p59770 Brassica napus HOM05D005998 ORTHO05D007664 2.6e-79 300.1 378 66.4
FvH4_2g17281 Fragaria vesca HOM05D005998 ORTHO05D007664 4.4e-79 299.3 379 69.9
Potri.017G056400 Populus trichocarpa HOM05D005998 ORTHO05D007664 1.3e-78 297.7 377 67.9
BolC5t34631H Brassica oleracea HOM05D005998 ORTHO05D007664 6.3e-78 295.4 378 65.3
CSS0043446 Camellia sinensis var. sinensis HOM05D005998 ORTHO05D007664 6.3e-78 295.4 361 65.4
A05p40660 Brassica napus HOM05D005998 ORTHO05D007664 1.8e-77 293.9 384 54.7
PSO573G0021 Papaver somniferum HOM05D005998 ORTHO05D007664 2.4e-77 293.5 288 60.1
PSO017G2023 Papaver somniferum HOM05D005998 ORTHO05D007664 1.0e-75 288.1 288 65.3
Sabra17G0050000 Salix brachista HOM05D005998 ORTHO05D007664 1.7e-75 287.3 377 67.4
BcaC05g29548 Brassica carinata HOM05D005998 ORTHO05D007664 2.2e-75 287.0 292 59.6
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 6.5e-75 285.4 379 42.0
CARHR082230 Cardamine hirsuta HOM05D005998 ORTHO05D007664 9.4e-74 281.6 382 60.5
Aa31LG5G18090 Aethionema arabicum HOM05D005998 ORTHO05D007664 1.2e-73 281.2 291 58.8
Cc02_g30680 Coffea canephora HOM05D005998 ORTHO05D007664 3.6e-73 279.6 387 55.3
BcaC05g29549 Brassica carinata HOM05D005998 ORTHO05D007664 8.8e-72 275.0 288 63.9
Eucgr.H00683 Eucalyptus grandis HOM05D005998 ORTHO05D007664 5.7e-71 272.3 387 62.5
Peaxi162Scf00372g00061 Petunia axillaris HOM05D005998 ORTHO05D007664 4.8e-70 269.2 385 53.8
Nitab4.5_0003952g0080 Nicotiana tabacum HOM05D005998 ORTHO05D007664 1.2e-68 264.6 385 54.3
PGSC0003DMG400020641 Solanum tuberosum HOM05D005998 ORTHO05D007664 1.2e-68 264.6 385 54.0
CAN.G181.48 Capsicum annuum HOM05D005998 ORTHO05D007664 1.6e-68 264.2 386 47.4
EL10Ac5g10571 Beta vulgaris HOM05D005998 ORTHO05D007664 7.7e-68 261.9 323 48.0
Sc05g0001600 Simmondsia chinensis HOM05D005998 ORTHO05D007664 1.0e-67 261.5 376 46.5
Sabra17G0048300 Salix brachista HOM05D005998 ORTHO05D007664 2.2e-67 260.4 355 68.2
Nitab4.5_0002641g0010 Nicotiana tabacum HOM05D005998 ORTHO05D007664 2.9e-67 260.0 385 53.8
Sopen06g002580 Solanum pennellii HOM05D005998 ORTHO05D007664 5.0e-67 259.2 385 53.8
Hma1.2p1_1756F.1_g301020 Hydrangea macrophylla HOM05D005998 ORTHO05D007664 1.1e-66 258.1 388 46.6
Solyc06g007680.1 Solanum lycopersicum HOM05D005998 ORTHO05D007664 3.2e-66 256.5 385 53.8
Duzib211G0440 Durio zibethinus HOM05D005998 ORTHO05D007664 2.3e-64 250.4 306 75.5
Nn1g09548 Nelumbo nucifera HOM05D005998 ORTHO05D007664 5.2e-64 249.2 255 68.6
Lsat_1_v5_gn_8_98580 Lactuca sativa HOM05D005998 ORTHO05D007664 8.8e-64 248.4 379 50.4
Migut.N00691 Erythranthe guttata HOM05D005998 ORTHO05D007664 1.2e-60 238.0 384 43.8
Haze_03601 Corylus avellana HOM05D005998 ORTHO05D007664 4.2e-58 229.6 391 46.8
PSO573G0042 Papaver somniferum HOM05D005998 ORTHO05D007664 3.0e-56 223.4 292 53.1
AUR62008051 Chenopodium quinoa HOM05D005998 ORTHO05D007664 6.3e-54 215.7 387 54.3
PSO017G6055 Papaver somniferum HOM05D005998 ORTHO05D007664 6.3e-54 215.7 401 45.9
PSO573G0007 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-53 214.9 397 46.9
AUR62028626 Chenopodium quinoa HOM05D005998 ORTHO05D007664 2.4e-53 213.8 323 49.2
Lj3g0009731 Lotus japonicus HOM05D005998 ORTHO05D007664 1.2e-52 211.5 388 58.5
Medtr8g028140 Medicago truncatula HOM05D005998 ORTHO05D007664 5.0e-51 206.1 386 58.8
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 2.5e-50 203.8 369 46.3
SEGI_17775 Sequoiadendron giganteum HOM05D005998 ORTHO05D007664 4.0e-48 196.4 293 46.4
Psat4g158400 Pisum sativum HOM05D005998 ORTHO05D007664 6.8e-48 195.7 386 57.5
Glyma.07G060100 Glycine max HOM05D005998 ORTHO05D007664 2.0e-47 194.1 383 58.2
TPR.G5126 Trifolium pratense HOM05D005998 ORTHO05D007664 9.8e-47 191.8 386 57.3
Ca_23566_v3 Cicer arietinum L. HOM05D005998 ORTHO05D007664 1.3e-46 191.4 382 58.9
Lsat_1_v5_gn_4_46380 Lactuca sativa HOM05D005998 ORTHO05D007664 2.9e-46 190.3 387 48.3
HanXRQChr08g0231291 Helianthus annuus HOM05D005998 ORTHO05D007664 4.1e-45 186.4 289 47.4
HanXRQChr08g0231301 Helianthus annuus HOM05D005998 ORTHO05D007664 4.1e-45 186.4 289 47.4
HPP92_024394 Vanilla planifolia HOM05D005998 ORTHO05D007664 5.4e-45 186.0 284 51.4
HanXRQChr08g0231281 Helianthus annuus HOM05D005998 ORTHO05D007664 1.5e-42 177.9 286 47.2
RcHm_v2.0_Chr5g0064201 Rosa chinensis HOM05D005998 ORTHO05D007664 2.0e-39 167.5 252 53.2
PSO017G3521 Papaver somniferum HOM05D005998 ORTHO05D007664 1.3e-38 164.9 292 46.9
Os11g0264200 Oryza sativa ssp. japonica HOM05D005998 ORTHO05D007664 6.0e-36 156.0 284 48.2
MD10G1146000 Malus domestica HOM05D005998 ORTHO05D007664 3.9e-35 153.3 282 52.8
ECA247G3308 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.6e-33 147.9 290 43.8
Dinv28780 Davidia involucrata HOM05D005998 ORTHO05D003775 1.1e-32 145.2 179 60.9
Zm00001eb112540 Zea mays HOM05D005998 ORTHO05D007664 6.8e-32 142.5 291 46.0
RcHm_v2.0_Chr7g0205731 Rosa chinensis HOM05D005998 ORTHO05D007664 8.9e-32 142.1 207 50.7
ATR0743G036 Amborella trichopoda HOM05D005998 ORTHO05D007664 1.2e-31 141.7 277 44.8
PSO017G0196 Papaver somniferum HOM05D005998 ORTHO05D007664 3.2e-29 133.7 285 40.7
PSO675G7594 Papaver somniferum HOM05D005998 ORTHO05D007664 1.7e-27 127.9 291 41.6
DCAR_000509 Daucus carota HOM05D005998 ORTHO05D007664 8.6e-27 125.6 241 56.4
PSO541G3130 Papaver somniferum HOM05D005998 ORTHO05D007664 6.2e-25 119.4 313 40.6
Mapoly0166s0007 Marchantia polymorpha HOM05D005998 ORTHO05D007664 1.1e-24 118.6 292 41.1
Rhsim13G0055600 Rhododendron simsii HOM05D005998 ORTHO05D007664 1.4e-24 118.2 387 27.6
Duzib138G0171 Durio zibethinus HOM05D005998 ORTHO05D007664 4.0e-24 116.7 88 67.0
ECA247G1983 Erigeron canadensis HOM05D005998 ORTHO05D007664 4.0e-24 116.7 306 30.7
CDE08G0319 Ceratophyllum demersum HOM05D005998 ORTHO05D007664 1.5e-23 114.8 90 58.9
ECA247G2512 Erigeron canadensis HOM05D005998 ORTHO05D007664 2.6e-23 114.0 299 31.4
ECA232G4734 Erigeron canadensis HOM05D005998 ORTHO05D007664 9.9e-23 112.1 285 38.9
PSO218G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 5.4e-21 106.3 287 37.3
PSO340G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 5.4e-21 106.3 287 37.3
PSO675G6053 Papaver somniferum HOM05D005998 ORTHO05D007664 5.4e-21 106.3 287 37.3
PSO675G6885 Papaver somniferum HOM05D005998 ORTHO05D007664 5.4e-21 106.3 287 37.3
PSO017G5443 Papaver somniferum HOM05D005998 ORTHO05D007664 1.2e-20 105.1 252 41.3
PSO675G8174 Papaver somniferum HOM05D005998 ORTHO05D007664 1.2e-20 105.1 286 37.8
PSO017G6716 Papaver somniferum HOM05D005998 ORTHO05D007664 6.2e-17 92.8 266 39.5
ECA247G3549 Erigeron canadensis HOM05D005998 ORTHO05D007664 8.1e-17 92.4 285 42.8
Zm00001eb182340 Zea mays HOM05D005998 ORTHO05D015715 1.4e-16 91.7 90 48.9
Zm00001eb048880 Zea mays HOM05D005998 ORTHO05D015715 1.8e-16 91.3 90 50.0
Oeu064702.2 Olea europaea HOM05D005998 ORTHO05D007664 4.0e-16 90.1 84 57.1
ECA247G2923 Erigeron canadensis HOM05D005998 ORTHO05D003386 1.5e-15 88.2 272 43.0
PSO017G0268 Papaver somniferum HOM05D005998 ORTHO05D007664 5.8e-15 86.3 172 34.9
PSO837G0015 Papaver somniferum HOM05D005998 ORTHO05D007664 1.3e-14 85.1 301 36.2
PSO017G6639 Papaver somniferum HOM05D005998 ORTHO05D007664 1.7e-14 84.7 144 40.3
PSO837G0060 Papaver somniferum HOM05D005998 ORTHO05D007664 1.7e-14 84.7 268 38.8
PSO017G7250 Papaver somniferum HOM05D005998 ORTHO05D007664 6.4e-14 82.8 245 40.4
PSO017G2859 Papaver somniferum HOM05D005998 ORTHO05D007664 1.6e-12 78.2 231 42.4
PSO017G4719 Papaver somniferum HOM05D005998 ORTHO05D007664 6.0e-12 76.3 169 32.0
PSO675G5104 Papaver somniferum HOM05D005998 ORTHO05D007664 5.6e-10 69.7 208 39.9
ECA247G1593 Erigeron canadensis HOM05D005998 ORTHO05D007664 9.6e-10 68.9 237 27.4
HanXRQChr16g0508881 Helianthus annuus HOM05D001905 ORTHO05D001820 1.4e-08 65.1 144 31.2
Lsat_1_v5_gn_1_22481 Lactuca sativa HOM05D001905 ORTHO05D001820 4.0e-08 63.5 154 31.2
Lj4C64T9 Lonicera japonica HOM05D001905 ORTHO05D001820 9.0e-08 62.4 142 32.4
PGR102G0223 Punica granatum HOM05D001905 ORTHO05D001820 9.0e-08 62.4 315 23.5
Sabra14G0016100 Salix brachista HOM05D001905 ORTHO05D001820 9.0e-08 62.4 143 32.2
PSO541G0922 Papaver somniferum HOM05D005998 ORTHO05D007664 1.2e-07 62.0 182 40.1
Potri.014G023500 Populus trichocarpa HOM05D001905 ORTHO05D001820 1.2e-07 62.0 147 30.6
Lj5g0027346 Lotus japonicus HOM05D001905 ORTHO05D001820 2.0e-07 61.2 148 30.4
Ca_13256_v3 Cicer arietinum L. HOM05D001905 ORTHO05D001820 2.6e-07 60.8 148 29.7
Lalb_Chr14g0368481 Lupinus albus HOM05D001905 ORTHO05D001820 2.6e-07 60.8 153 28.8
Potri.005G141800 Populus trichocarpa HOM05D001905 ORTHO05D001820 2.6e-07 60.8 141 31.2
PSO017G7319 Papaver somniferum HOM05D005998 ORTHO05D007664 3.4e-07 60.5 95 38.9
GSVIVG01000227001 Vitis vinifera HOM05D001905 ORTHO05D001820 3.4e-07 60.5 153 29.4
CARHR159150 Cardamine hirsuta HOM05D001905 ORTHO05D001820 4.5e-07 60.1 141 31.2
MSTRG.24343 Avicennia marina HOM05D001905 ORTHO05D001820 5.8e-07 59.7 149 31.5
Lalb_Chr22g0354901 Lupinus albus HOM05D001905 ORTHO05D001820 5.8e-07 59.7 165 27.9
Manes.05G177200 Manihot esculenta HOM05D001905 ORTHO05D001820 5.8e-07 59.7 142 31.7
THA.LOC104825763 Tarenaya hassleriana HOM05D001905 ORTHO05D001820 5.8e-07 59.7 162 30.2
Phvul.001G024700 Phaseolus vulgaris HOM05D001905 ORTHO05D001820 7.6e-07 59.3 159 27.7
QL02p003969 Quercus lobata HOM05D001905 ORTHO05D001820 7.6e-07 59.3 142 30.3
Duzib116G0512 Durio zibethinus HOM05D001905 ORTHO05D001820 9.9e-07 58.9 142 31.7
Gohir.D05G209000 Gossypium hirsutum HOM05D001905 ORTHO05D001820 9.9e-07 58.9 154 30.5
Gorai.009G215400 Gossypium raimondii HOM05D001905 ORTHO05D001820 9.9e-07 58.9 154 30.5
Ciclev10025355m.g Citrus clementina HOM05D001905 ORTHO05D001820 1.3e-06 58.5 137 32.1
vmacro21487 Vaccinium macrocarpon HOM05D001905 ORTHO05D001820 1.3e-06 58.5 142 31.0
Aqoxy6G02895 Aquilegia oxysepala HOM05D001905 ORTHO05D001820 1.7e-06 58.2 143 30.1
CAN.G370.17 Capsicum annuum HOM05D001905 ORTHO05D001820 1.7e-06 58.2 140 30.7
FAN24G0672 Fragaria x ananassa HOM05D001905 ORTHO05D001820 1.7e-06 58.2 142 31.0
PGR083G0249 Punica granatum HOM05D001905 ORTHO05D001820 1.7e-06 58.2 150 28.0
COL.COLO4_10116 Corchorus olitorius HOM05D001905 ORTHO05D001820 2.2e-06 57.8 143 32.2
Migut.C00532 Erythranthe guttata HOM05D001905 ORTHO05D001820 2.2e-06 57.8 153 28.8
PSO573G0016 Papaver somniferum HOM05D005998 ORTHO05D007664 2.2e-06 57.8 204 32.8
Potri.002G123100 Populus trichocarpa HOM05D001905 ORTHO05D001820 2.2e-06 57.8 142 31.7
Solyc02g092990.1 Solanum lycopersicum HOM05D001905 ORTHO05D001820 2.2e-06 57.8 140 30.7
Sopen02g037550 Solanum pennellii HOM05D001905 ORTHO05D001820 2.2e-06 57.8 140 30.7
TWI36G1711 Tripterygium wilfordii HOM05D001905 ORTHO05D001820 2.2e-06 57.8 142 29.6
Atru.chr3.257 Acer truncatum HOM05D001905 ORTHO05D001820 2.9e-06 57.4 140 32.9
AT4G07400 Arabidopsis thaliana HOM05D001905 ORTHO05D001820 2.9e-06 57.4 154 28.6
Cfa018056 Carpinus fangiana HOM05D001905 ORTHO05D001820 2.9e-06 57.4 312 23.1
Mapoly0026s0081 Marchantia polymorpha HOM05D001905 ORTHO05D001820 2.9e-06 57.4 146 29.5
Peaxi162Scf00549g00043 Petunia axillaris HOM05D001905 ORTHO05D001820 2.9e-06 57.4 145 29.0
Sabra02G0096400 Salix brachista HOM05D001905 ORTHO05D001820 2.9e-06 57.4 153 30.7
Gorai.002G133700 Gossypium raimondii HOM05D001905 ORTHO05D001820 3.8e-06 57.0 154 30.5
Actinidia03809 Actinidia chinensis HOM05D001905 ORTHO05D001820 4.9e-06 56.6 149 29.5
Aqoxy5G01162 Aquilegia oxysepala HOM05D001905 ORTHO05D001820 4.9e-06 56.6 142 28.9
Cpa.g.sc21.154 Carica papaya HOM05D001905 ORTHO05D001820 4.9e-06 56.6 158 30.4
MELO3C016784.2 Cucumis melo HOM05D001905 ORTHO05D001820 4.9e-06 56.6 142 29.6
PSO170G2100 Papaver somniferum HOM05D001905 ORTHO05D001820 4.9e-06 56.6 147 28.6
Ciclev10000831m.g Citrus clementina HOM05D001905 ORTHO05D001820 6.4e-06 56.2 142 31.7
PSO210G0464 Papaver somniferum HOM05D001905 ORTHO05D001820 6.4e-06 56.2 147 28.6
Dinv35926 Davidia involucrata HOM05D001905 ORTHO05D001820 8.4e-06 55.8 156 30.1
Duzib264G1203 Durio zibethinus HOM05D001905 ORTHO05D001820 8.4e-06 55.8 141 30.5
Glyma.13G211600 Glycine max HOM05D002762 ORTHO05D004643 8.4e-06 55.8 187 33.7


User provided reference genes

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