Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.4e-240 835.9 428 100.0
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 5.5e-136 488.4 431 63.8
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.3e-113 414.1 452 55.3
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 3.9e-113 412.5 455 53.6
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 1.6e-111 407.1 448 55.1
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.3e-108 397.5 444 53.6
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 1.6e-106 390.6 448 52.7
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 6.4e-100 368.6 457 49.9
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 8.4e-100 368.2 455 50.1
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 2.1e-98 363.6 455 49.7
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 2.5e-96 356.7 444 49.5
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 4.8e-95 352.4 443 50.1
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 6.9e-94 348.6 450 49.1
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.3e-92 344.4 443 49.7
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.8e-92 342.8 453 48.3
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 4.9e-92 342.4 441 49.7
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.4e-91 340.9 447 48.1
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.4e-91 340.9 440 49.8
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 2.1e-90 337.0 447 48.3
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 3.5e-90 336.3 448 48.0
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 1.0e-89 334.7 385 53.5
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 9.6e-88 328.2 434 48.2
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 1.8e-86 323.9 447 48.5
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.5e-85 320.9 452 45.4
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 4.5e-85 319.3 437 47.6
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.3e-84 317.8 438 48.4
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.1e-83 314.7 437 46.9
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 1.3e-81 307.8 449 45.2
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.8e-81 307.4 455 44.6
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 1.1e-80 304.7 448 44.6
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 5.6e-80 302.4 447 45.9
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 2.8e-79 300.1 455 44.6
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 2.8e-79 300.1 448 45.1
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 1.1e-78 298.1 456 45.2
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 5.3e-78 295.8 445 45.6
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 6.4e-76 288.9 432 44.0
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 2.7e-74 283.5 446 44.8
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.3e-73 281.2 446 44.2
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 4.3e-72 276.2 449 44.8
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 1.3e-71 274.6 448 44.4
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 8.2e-71 271.9 442 44.3
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.8e-70 270.8 441 43.1
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 5.3e-70 269.2 441 44.7
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 5.3e-70 269.2 442 42.3
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 5.3e-70 269.2 440 43.0
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 9.0e-70 268.5 447 43.8
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.0e-68 265.0 453 40.4
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 2.9e-68 263.5 479 40.5
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.9e-68 263.5 441 42.0
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 8.4e-68 261.9 437 42.8
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.1e-67 261.5 460 42.0
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 3.2e-67 260.0 452 41.8
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.2e-67 260.0 441 40.6
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 9.3e-67 258.5 449 41.4
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 2.7e-66 256.9 440 40.7
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 1.5e-64 251.1 455 41.3
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 1.5e-64 251.1 427 41.0
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 4.3e-64 249.6 443 41.8
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 1.3e-63 248.1 449 41.0
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 2.8e-63 246.9 460 40.7
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 1.4e-62 244.6 449 40.5
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 1.4e-62 244.6 441 41.0
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 4.1e-62 243.0 448 41.1
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 5.3e-62 242.7 432 41.0
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 9.0e-62 241.9 452 38.9
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 7.7e-61 238.8 439 39.0
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.0e-60 238.4 414 40.6
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.2e-60 237.3 437 41.6
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 3.8e-60 236.5 447 37.8
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 5.0e-60 236.1 443 40.0
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 1.4e-59 234.6 455 38.5
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.9e-59 234.2 436 39.9
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.2e-59 233.0 369 42.8
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 5.5e-59 232.6 445 40.4
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.6e-58 231.1 439 38.7
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.1e-58 230.7 474 37.6
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.1e-58 230.7 455 39.8
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.4e-57 228.0 371 42.0
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.8e-57 227.6 434 39.9
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 1.8e-57 227.6 451 38.6
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 3.0e-57 226.9 448 38.4
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 5.1e-57 226.1 464 37.9
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 6.7e-57 225.7 430 38.6
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 5.7e-56 222.6 492 37.0
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 2.8e-55 220.3 453 38.9
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.7e-55 219.9 443 40.0
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 6.3e-55 219.2 444 39.2
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.1e-54 218.4 471 36.9
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 3.1e-54 216.9 443 36.6
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 4.1e-54 216.5 450 38.7
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 2.6e-53 213.8 440 38.2
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 2.6e-53 213.8 440 39.8
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 2.6e-53 213.8 440 38.0
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 2.6e-53 213.8 444 35.8
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 1.3e-52 211.5 449 37.4
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 3.8e-52 209.9 443 37.0
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.1e-51 208.4 470 36.8
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.9e-51 207.6 455 39.1
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.5e-51 207.2 545 34.1
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.2e-50 204.9 448 35.0
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 1.2e-50 204.9 433 38.6
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.1e-50 204.1 450 36.9
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.8e-49 201.1 433 38.3
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 3.9e-49 199.9 432 38.0
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 9.7e-48 195.3 432 37.3
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 1.3e-47 194.9 430 37.7
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.7e-47 194.5 385 37.9
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 8.2e-47 192.2 452 35.6
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 8.2e-47 192.2 450 36.0
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.8e-46 191.0 442 36.2
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.8e-46 191.0 442 37.6
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 2.4e-46 190.7 446 37.9
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 9.1e-46 188.7 442 35.5
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 2.6e-45 187.2 431 35.3
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 3.5e-45 186.8 450 36.2
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 3.5e-45 186.8 433 36.3
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 4.5e-45 186.4 439 35.8
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 7.7e-45 185.7 422 36.3
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.0e-44 185.3 433 37.2
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 1.0e-44 185.3 441 34.5
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.2e-44 184.1 420 36.2
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 5.0e-44 183.0 278 46.4
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 5.0e-44 183.0 443 33.9
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.2e-43 179.9 432 35.2
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.2e-42 178.3 441 35.4
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.6e-42 177.9 446 35.7
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 2.1e-42 177.6 226 46.0
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 2.1e-42 177.6 443 35.9
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.4e-41 174.9 444 33.8
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 5.2e-41 172.9 310 39.0
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 6.7e-41 172.6 441 34.7
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.1e-40 171.8 456 33.6
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 9.7e-40 168.7 448 32.8
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.4e-38 164.9 437 34.3
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 3.1e-38 163.7 447 34.2
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.5e-37 159.8 449 33.4
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.0e-36 158.7 449 33.2
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.3e-36 158.3 366 35.2
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 3.8e-36 156.8 447 32.7
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 3.8e-36 156.8 433 32.8
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 6.5e-36 156.0 301 38.2
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.5e-35 154.8 443 33.0
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 1.9e-35 154.5 443 33.6
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 2.5e-35 154.1 442 32.4
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 3.2e-35 153.7 430 34.2
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.5e-35 152.9 443 33.6
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 3.0e-33 147.1 371 34.8
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 4.0e-33 146.7 448 31.0
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 4.0e-33 146.7 447 33.3
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.5e-32 144.8 449 33.4
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.4e-30 138.3 455 32.1
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 1.8e-30 137.9 454 31.1
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.8e-30 137.9 326 33.4
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 2.4e-30 137.5 447 32.4
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 2.7e-29 134.0 463 29.8
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 2.2e-28 131.0 406 31.5
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 2.2e-28 131.0 442 33.3
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.9e-27 127.9 377 33.2
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 2.7e-26 124.0 433 31.6
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 6.8e-25 119.4 328 33.5
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 6.8e-25 119.4 440 30.7
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 8.8e-25 119.0 444 31.8
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 7.5e-24 115.9 265 37.4
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.2e-23 114.4 350 30.9
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 2.8e-23 114.0 430 28.1
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 6.3e-23 112.8 351 30.5
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 3.1e-22 110.5 263 35.4
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.0e-17 94.0 184 35.9
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 4.4e-16 90.1 428 26.2
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 1.2e-13 82.0 208 32.7
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 3.5e-13 80.5 97 47.4
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 7.8e-13 79.3 170 39.4
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 1.3e-12 78.6 143 37.8
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 6.6e-12 76.3 184 35.3
FAN14G0132 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.6e-12 76.3 351 26.2
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.5e-11 75.1 133 39.1
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 9.5e-11 72.4 81 49.4
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 3.6e-10 70.5 81 46.9
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 4.7e-10 70.1 81 46.9
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 6.2e-10 69.7 202 31.2
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 1.4e-09 68.6 511 26.8
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 8.9e-09 65.9 187 34.8
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 8.9e-09 65.9 123 35.0
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 8.9e-09 65.9 533 24.6
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 3.4e-08 63.9 80 41.2
SalBow6G4465 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.1e-06 58.9 149 33.6
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 5.4e-06 56.6 218 28.9


User provided reference genes

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