Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015265m.g Citrus clementina HOM05D003290 ORTHO05D003866 5.5e-248 860.5 442 100.0
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 5.0e-172 608.2 447 72.3
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 8.5e-164 580.9 460 65.7
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 2.3e-161 572.8 446 66.4
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 4.4e-160 568.5 456 66.4
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 4.8e-159 565.1 457 67.4
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 5.3e-158 561.6 444 66.7
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 5.9e-157 558.1 450 64.4
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 1.0e-156 557.4 446 66.6
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 2.9e-156 555.8 446 66.8
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 2.5e-155 552.7 447 64.7
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 4.2e-155 552.0 441 66.0
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 7.2e-155 551.2 446 65.0
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.6e-154 550.1 446 65.7
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 2.1e-154 549.7 451 64.5
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 6.1e-154 548.1 448 65.2
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 6.7e-153 544.7 446 64.6
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 2.0e-152 543.1 456 63.2
vmacro10756 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 2.8e-151 539.3 475 62.3
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 8.2e-151 537.7 451 62.3
TAR629G0420 Trochodendron aralioides HOM05D003290 ORTHO05D003866 8.2e-151 537.7 449 64.8
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 3.5e-149 532.3 445 62.2
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 2.5e-147 526.2 452 61.3
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 6.1e-146 521.5 444 63.3
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 8.0e-146 521.2 437 63.8
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 1.8e-145 520.0 444 62.6
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 1.8e-145 520.0 446 62.1
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 6.8e-145 518.1 452 60.6
CiPaw.05G159900 Carya illinoinensis HOM05D003290 ORTHO05D003866 2.6e-144 516.2 443 61.9
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 2.2e-143 513.1 460 61.3
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 4.8e-143 511.9 460 61.3
Nitab4.5_0001529g0040 Nicotiana tabacum HOM05D003290 ORTHO05D003866 8.3e-143 511.1 449 61.2
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 8.3e-143 511.1 520 55.2
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.1e-142 510.8 460 60.9
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 1.4e-142 510.4 440 60.7
Cc11_g05260 Coffea canephora HOM05D003290 ORTHO05D003866 5.3e-142 508.4 443 62.3
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 7.0e-142 508.1 450 62.2
DCAR_030317 Daucus carota HOM05D003290 ORTHO05D003866 5.9e-141 505.0 446 58.7
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 1.7e-140 503.4 343 73.8
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 2.9e-140 502.7 440 60.2
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 2.9e-140 502.7 446 61.2
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 3.8e-140 502.3 447 61.3
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 3.8e-140 502.3 447 61.3
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 1.5e-139 500.4 447 61.1
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 1.5e-139 500.4 441 60.1
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 1.6e-138 496.9 443 61.2
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 2.7e-138 496.1 448 58.9
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 6.1e-138 495.0 445 60.2
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 1.5e-136 490.3 449 59.0
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 9.8e-136 487.6 449 58.8
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 1.3e-135 487.3 449 58.4
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 2.2e-135 486.5 442 60.2
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 4.8e-135 485.3 448 58.9
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 1.4e-134 483.8 445 60.4
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 2.4e-134 483.0 455 56.7
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 7.0e-134 481.5 444 57.0
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 7.7e-133 478.0 458 58.7
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 1.7e-132 476.9 448 58.9
Sc03g0005960 Simmondsia chinensis HOM05D003290 ORTHO05D003866 1.7e-132 476.9 451 57.6
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 2.9e-132 476.1 443 58.7
CAN.G282.93 Capsicum annuum HOM05D003290 ORTHO05D003866 1.1e-131 474.2 455 56.7
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 1.1e-131 474.2 443 58.9
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 2.8e-130 469.5 447 57.7
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 2.3e-129 466.5 446 58.1
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 8.9e-129 464.5 440 57.5
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 1.5e-128 463.8 504 52.6
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 2.0e-128 463.4 471 54.4
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 5.7e-128 461.8 444 55.6
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 3.2e-126 456.1 452 55.5
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 4.1e-126 455.7 445 58.0
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 1.2e-125 454.1 445 56.0
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 2.0e-125 453.4 453 54.3
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 2.3e-124 449.9 444 55.6
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.9e-123 446.8 343 65.9
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 4.3e-123 445.7 453 54.7
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 6.1e-122 441.8 443 54.2
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 1.0e-121 441.0 448 56.9
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 4.0e-121 439.1 444 54.3
CiPaw.05G160100 Carya illinoinensis HOM05D003290 ORTHO05D003866 2.0e-120 436.8 345 65.8
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 4.4e-120 435.6 451 52.8
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 5.8e-120 435.3 341 65.7
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 7.5e-120 434.9 467 54.4
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 2.4e-118 429.9 444 53.2
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 1.2e-117 427.6 444 52.9
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 2.0e-117 426.8 444 52.9
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 3.5e-117 426.0 444 52.7
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 4.6e-117 425.6 444 52.7
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 7.8e-117 424.9 444 52.5
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.5e-115 420.6 445 51.9
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 4.3e-115 419.1 445 51.9
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 1.3e-111 407.5 444 52.7
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 1.0e-108 397.9 339 60.8
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 1.3e-108 397.5 439 51.7
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 1.8e-105 387.1 446 49.6
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 8.9e-105 384.8 444 48.4
CARHR144580 Cardamine hirsuta HOM05D003290 ORTHO05D003866 2.6e-104 383.3 442 50.0
DCAR_030318 Daucus carota HOM05D003290 ORTHO05D003866 6.4e-103 378.6 344 54.9
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 2.4e-102 376.7 844 34.1
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 3.2e-102 376.3 445 50.1
Cpa.g.sc2.68 Carica papaya HOM05D003290 ORTHO05D003866 1.3e-100 370.9 240 75.8
Zm00001eb033240 Zea mays HOM05D003290 ORTHO05D003866 1.7e-100 370.5 457 46.8
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 3.4e-96 356.3 306 57.5
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 1.3e-95 354.4 318 56.6
Haze_10795 Corylus avellana HOM05D003290 ORTHO05D003866 1.4e-94 350.9 244 70.5
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 2.4e-94 350.1 316 56.0
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 7.3e-91 338.6 462 42.9
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 3.0e-76 290.0 306 51.6
MD13G1014100 Malus domestica HOM05D003290 ORTHO05D003866 1.3e-74 284.6 291 55.3
MD16G1011300 Malus domestica HOM05D003290 ORTHO05D003866 7.9e-69 265.4 196 68.9
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 5.1e-68 262.7 451 38.1
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 6.7e-68 262.3 265 54.0
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 1.9e-67 260.8 442 39.1
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 3.7e-66 256.5 297 50.8
Hma1.2p1_0068F.1_g037320 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 1.5e-64 251.1 151 76.8
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 2.5e-62 243.8 450 37.1
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 3.5e-61 240.0 458 35.4
SMO367G0872 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 3.3e-59 233.4 232 47.0
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 1.3e-58 231.5 442 34.2
SMO367G0300 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 2.2e-58 230.7 292 40.8
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 2.0e-56 224.2 449 35.4
Cpa.g.sc2.70 Carica papaya HOM05D003290 ORTHO05D003866 8.5e-55 218.8 207 59.4
Haze_10794 Corylus avellana HOM05D003290 ORTHO05D003866 2.5e-54 217.2 203 60.1
Eucgr.B02635 Eucalyptus grandis HOM05D003290 ORTHO05D003866 3.0e-52 210.3 269 42.0
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 1.7e-50 204.5 261 41.4
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 4.8e-50 203.0 268 41.0
Peaxi162Scf00130g01216 Petunia axillaris HOM05D003290 ORTHO05D003866 4.8e-50 203.0 268 42.2
Nitab4.5_0009873g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 5.3e-49 199.5 243 45.7
Solyc04g018100.4 Solanum lycopersicum HOM05D003290 ORTHO05D003866 9.1e-49 198.7 275 41.1
SEGI_17003 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 4.5e-48 196.4 157 59.9
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 7.7e-48 195.7 262 41.2
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 5.5e-38 162.9 179 48.6
SEGI_28338 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 5.3e-33 146.4 309 35.9
Hma1.2p1_0068F.1_g037310 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 8.8e-28 129.0 203 45.8
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 6.3e-26 122.9 106 57.5
Potri.007G100500 Populus trichocarpa HOM05D003290 ORTHO05D003866 2.1e-21 107.8 103 63.1
HanXRQChr13g0400621 Helianthus annuus HOM05D003290 ORTHO05D003866 6.3e-18 96.3 111 50.5
CAN.G282.92 Capsicum annuum HOM05D003290 ORTHO05D003866 1.5e-14 85.1 130 42.3
MD16G1011200 Malus domestica HOM05D003290 ORTHO05D003866 1.2e-13 82.0 76 53.9
Ah.03g147340 Amaranthus hybridus HOM05D003290 ORTHO05D003866 8.0e-13 79.3 277 30.3
arahy.Tifrunner.gnm1.ann1.DQT168 Arachis hypogaea HOM05D003290 ORTHO05D003866 4.9e-10 70.1 58 58.6
Sopen00g005880 Solanum pennellii HOM05D003290 ORTHO05D003866 6.4e-10 69.7 123 38.2
Sopen04g009320 Solanum pennellii HOM05D000004 ORTHO05D000002 8.3e-10 69.3 117 38.5
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 5.0e-07 60.1 38 71.1
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 5.0e-07 60.1 38 71.1
A06p10710 Brassica napus HOM05D003290 ORTHO05D003866 5.0e-07 60.1 38 71.1
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 5.0e-07 60.1 38 71.1
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 5.0e-07 60.1 38 71.1
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 1.1e-06 58.9 38 71.1
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 1.1e-06 58.9 38 71.1
CARHR015150 Cardamine hirsuta HOM05D003290 ORTHO05D003866 1.1e-06 58.9 35 77.1
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.5e-06 58.5 38 65.8
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 7.3e-06 56.2 38 68.4
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 9.5e-06 55.8 37 62.2
Sp1g13040 Schrenkiella parvula HOM05D003290 ORTHO05D003866 9.5e-06 55.8 36 63.9


User provided reference genes

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