Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015184m.g Citrus clementina HOM05D006718 ORTHO05D008492 2.9e-255 884.8 459 100.0
TWI38G0042 Tripterygium wilfordii HOM05D006718 ORTHO05D008492 3.2e-89 333.2 503 46.1
Atru.chr12.1182 Acer truncatum HOM05D006718 ORTHO05D008492 8.2e-85 318.5 529 42.7
Manes.07G082900 Manihot esculenta HOM05D006718 ORTHO05D008492 5.3e-84 315.8 482 48.1
QL04p050382 Quercus lobata HOM05D006718 ORTHO05D008492 1.9e-78 297.4 540 43.0
Cfa010452 Carpinus fangiana HOM05D006718 ORTHO05D008492 7.4e-78 295.4 506 43.5
Haze_03406 Corylus avellana HOM05D006718 ORTHO05D008492 1.4e-76 291.2 553 41.8
MD07G1054700 Malus domestica HOM05D006718 ORTHO05D008492 1.4e-76 291.2 492 43.7
Prupe.2G061400 Prunus persica HOM05D006718 ORTHO05D008492 4.1e-76 289.7 542 42.6
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 3.4e-75 286.6 461 44.7
MD02G1263300 Malus domestica HOM05D006718 ORTHO05D008492 5.5e-73 279.3 510 42.2
CANSAT56G0860 Cannabis sativa HOM05D006718 ORTHO05D008492 1.9e-70 270.8 548 40.1
Dinv24591 Davidia involucrata HOM05D006718 ORTHO05D008492 1.4e-68 264.6 582 36.8
Potri.010G246500 Populus trichocarpa HOM05D006718 ORTHO05D008492 2.5e-65 253.8 598 37.3
Sabra10G0192200 Salix brachista HOM05D006718 ORTHO05D008492 1.3e-61 241.5 597 36.2
Sabra08G0007500 Salix brachista HOM05D006718 ORTHO05D008492 8.2e-61 238.8 598 36.6
RcHm_v2.0_Chr3g0490591 Rosa chinensis HOM05D006718 ORTHO05D008492 2.9e-58 230.3 478 42.5
Gohir.A06G171400 Gossypium hirsutum HOM05D006718 ORTHO05D008492 2.5e-57 227.3 497 38.8
TAR369G0954 Trochodendron aralioides HOM05D006718 ORTHO05D008492 1.2e-56 224.9 502 38.8
Gohir.D06G179500 Gossypium hirsutum HOM05D006718 ORTHO05D008492 2.7e-56 223.8 495 39.8
Gorai.010G210100 Gossypium raimondii HOM05D006718 ORTHO05D008492 6.1e-56 222.6 495 39.8
Eucgr.J00311 Eucalyptus grandis HOM05D006718 ORTHO05D008492 1.8e-55 221.1 430 38.4
MELO3C019922.2 Cucumis melo HOM05D006718 ORTHO05D008492 3.9e-55 219.9 495 38.8
CiPaw.13G047100 Carya illinoinensis HOM05D006718 ORTHO05D008492 5.2e-55 219.5 335 45.1
Lalb_Chr25g0284721 Lupinus albus HOM05D006718 ORTHO05D008492 2.6e-54 217.2 501 38.9
CsaV3_6G004530 Cucumis sativus L. HOM05D006718 ORTHO05D008492 7.4e-54 215.7 493 38.3
ClCG08G008520 Citrullus lanatus HOM05D006718 ORTHO05D008492 5.3e-52 209.5 529 36.7
FAN19G2415 Fragaria x ananassa HOM05D006718 ORTHO05D008492 5.3e-52 209.5 486 39.5
Thhalv10013325m.g Eutrema salsugineum HOM05D006718 ORTHO05D008492 1.0e-50 205.3 493 37.1
FAN23G2020 Fragaria x ananassa HOM05D006718 ORTHO05D008492 3.8e-50 203.4 495 38.4
Duzib128G0030 Durio zibethinus HOM05D006718 ORTHO05D008492 8.5e-50 202.2 303 45.9
FAN28G2084 Fragaria x ananassa HOM05D006718 ORTHO05D008492 2.5e-49 200.7 473 39.7
Glyma.14G084400 Glycine max HOM05D006718 ORTHO05D008492 1.2e-48 198.4 517 35.8
FvH4_1g30390 Fragaria vesca HOM05D006718 ORTHO05D008492 2.7e-48 197.2 474 39.5
Sed0008467 Sechium edule HOM05D006718 ORTHO05D008492 3.6e-48 196.8 508 35.8
AT5G18440 Arabidopsis thaliana HOM05D006718 ORTHO05D008492 1.4e-47 194.9 385 42.3
MSTRG.5086 Avicennia marina HOM05D006718 ORTHO05D008492 2.3e-47 194.1 485 34.4
Migut.O00435 Erythranthe guttata HOM05D006718 ORTHO05D008492 4.0e-47 193.4 486 36.0
MBI15_g36944_MAGBIO Magnolia biondii HOM05D006718 ORTHO05D008492 4.0e-47 193.4 363 41.0
EL10Ac4g08778 Beta vulgaris HOM05D006718 ORTHO05D008492 6.7e-47 192.6 519 34.7
Sp6g25880 Schrenkiella parvula HOM05D006718 ORTHO05D008492 6.7e-47 192.6 489 35.6
AL6G29690 Arabidopsis lyrata HOM05D006718 ORTHO05D008492 2.6e-46 190.7 419 37.7
THA.LOC104811338 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 4.4e-46 189.9 418 40.4
Glyma.17G240500 Glycine max HOM05D006718 ORTHO05D008492 7.5e-46 189.1 541 35.5
Nn2g14019 Nelumbo nucifera HOM05D006718 ORTHO05D008492 9.7e-46 188.7 482 36.7
PGR044G1203 Punica granatum HOM05D006718 ORTHO05D008492 6.3e-45 186.0 504 37.5
Lj7A493G35 Lonicera japonica HOM05D006718 ORTHO05D008492 8.2e-45 185.7 260 45.8
Carub.0006s1670 Capsella rubella HOM05D006718 ORTHO05D008492 2.4e-44 184.1 422 37.2
AUR62014308 Chenopodium quinoa HOM05D006718 ORTHO05D008492 5.3e-44 183.0 523 35.4
Phvul.011G216700 Phaseolus vulgaris HOM05D006718 ORTHO05D008492 7.0e-44 182.6 443 36.8
Sc09g0004890 Simmondsia chinensis HOM05D006718 ORTHO05D008492 1.2e-43 181.8 400 36.5
Hund06826 Selenicereus undatus HOM05D006718 ORTHO05D008492 7.7e-43 179.1 524 33.6
GSVIVG01027215001 Vitis vinifera HOM05D006718 ORTHO05D008492 2.2e-42 177.6 465 36.8
Ca_03601_v3 Cicer arietinum L. HOM05D006718 ORTHO05D008492 3.8e-42 176.8 455 37.8
AUR62034103 Chenopodium quinoa HOM05D006718 ORTHO05D008492 6.5e-42 176.0 517 34.8
DCAR_006628 Daucus carota HOM05D006718 ORTHO05D008492 1.5e-41 174.9 200 50.0
Aqoxy1G00086 Aquilegia oxysepala HOM05D006718 ORTHO05D008492 2.1e-40 171.0 506 35.0
SGA_v2.0_scaffold196G40987 Striga asiatica HOM05D006718 ORTHO05D008492 1.0e-39 168.7 490 33.1
C09p58250 Brassica napus HOM05D006718 ORTHO05D008492 1.5e-38 164.9 362 37.8
VMungo0647G0438 Vigna mungo HOM05D006718 ORTHO05D008492 2.0e-38 164.5 406 35.5
Cc02_g32070 Coffea canephora HOM05D006718 ORTHO05D008492 3.4e-38 163.7 509 32.0
PSO339G3483 Papaver somniferum HOM05D006718 ORTHO05D008492 3.4e-38 163.7 488 33.8
Migut.N01880 Erythranthe guttata HOM05D006718 ORTHO05D008492 7.5e-38 162.5 187 50.3
PSO384G1654 Papaver somniferum HOM05D006718 ORTHO05D008492 2.2e-37 161.0 489 33.7
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 2.2e-37 161.0 514 34.4
Aa31LG11G11170 Aethionema arabicum HOM05D006718 ORTHO05D008492 3.7e-37 160.2 518 33.4
A10p21140 Brassica napus HOM05D006718 ORTHO05D008492 3.7e-37 160.2 364 37.9
CSS0042038 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 1.4e-36 158.3 173 52.0
Potri.008G012250 Populus trichocarpa HOM05D006718 ORTHO05D008492 1.4e-36 158.3 296 40.9
BolC9t58690H Brassica oleracea HOM05D006718 ORTHO05D008492 1.8e-36 157.9 365 37.5
CARHR194580 Cardamine hirsuta HOM05D006718 ORTHO05D008492 1.8e-36 157.9 428 35.0
SalBow4G0879 Salvia bowleyana HOM05D006718 ORTHO05D008492 2.4e-36 157.5 495 33.1
COL.COLO4_28900 Corchorus olitorius HOM05D006718 ORTHO05D008492 1.2e-35 155.2 163 55.8
Ah.06g191200 Amaranthus hybridus HOM05D006718 ORTHO05D008492 2.7e-35 154.1 489 30.9
Lj3g0008993 Lotus japonicus HOM05D006718 ORTHO05D008492 7.7e-35 152.5 517 33.8
Nitab4.5_0001611g0090 Nicotiana tabacum HOM05D006718 ORTHO05D008492 7.7e-35 152.5 486 34.4
Peaxi162Scf00647g00315 Petunia axillaris HOM05D006718 ORTHO05D008492 3.8e-34 150.2 544 31.4
Sopen01g040630 Solanum pennellii HOM05D006718 ORTHO05D008492 1.9e-33 147.9 507 32.7
Nitab4.5_0005056g0030 Nicotiana tabacum HOM05D006718 ORTHO05D008492 3.3e-33 147.1 453 34.9
Solyc01g096920.3 Solanum lycopersicum HOM05D006718 ORTHO05D008492 5.5e-33 146.4 504 32.3
HanXRQChr09g0250361 Helianthus annuus HOM05D006718 ORTHO05D008492 1.6e-32 144.8 483 32.9
HPP92_007508 Vanilla planifolia HOM05D006718 ORTHO05D008492 1.8e-31 141.4 473 31.7
BcaB08g36679 Brassica carinata HOM05D006718 ORTHO05D008492 3.0e-31 140.6 364 36.0
CAN.G134.56 Capsicum annuum HOM05D006718 ORTHO05D008492 5.2e-31 139.8 455 34.5
PGSC0003DMG400027524 Solanum tuberosum HOM05D006718 ORTHO05D008492 5.2e-31 139.8 486 32.7
unitig_899.g15585 Utricularia gibba HOM05D006718 ORTHO05D008492 2.0e-30 137.9 369 33.6
BcaC04g18692 Brassica carinata HOM05D006718 ORTHO05D008492 2.6e-30 137.5 217 43.8
BraA10t44177Z Brassica rapa HOM05D006718 ORTHO05D008492 5.7e-30 136.3 367 34.9
vmacro20846 Vaccinium macrocarpon HOM05D006718 ORTHO05D008492 4.9e-29 133.3 418 31.6
Medtr2g067220 Medicago truncatula HOM05D006718 ORTHO05D008492 6.3e-29 132.9 487 32.9
Os01g0814000 Oryza sativa ssp. japonica HOM05D006718 ORTHO05D008492 4.5e-27 126.7 170 47.6
Rhsim01G0121600 Rhododendron simsii HOM05D006718 ORTHO05D008492 6.6e-26 122.9 525 30.5
TPR.G33809 Trifolium pratense HOM05D006718 ORTHO05D008492 1.5e-25 121.7 522 30.8
FAN26G3384 Fragaria x ananassa HOM05D006718 ORTHO05D008492 3.3e-25 120.6 446 32.7
ECA232G4797 Erigeron canadensis HOM05D006718 ORTHO05D008492 6.1e-24 116.3 541 30.1
ATR0068G071 Amborella trichopoda HOM05D006718 ORTHO05D008492 2.3e-23 114.4 448 32.6
Zm00001eb149940 Zea mays HOM05D006718 ORTHO05D008492 1.2e-22 112.1 172 42.4
Cpa.g.sc163.26 Carica papaya HOM05D006718 ORTHO05D008492 9.8e-22 109.0 126 52.4
A02p04900 Brassica napus HOM05D006718 ORTHO05D008492 2.2e-21 107.8 364 34.3
Lsat_1_v5_gn_4_139420 Lactuca sativa HOM05D006718 ORTHO05D008492 1.1e-20 105.5 433 30.3
COL.COLO4_28901 Corchorus olitorius HOM05D006718 ORTHO05D008492 4.7e-16 90.1 262 32.8
CDE04G2801 Ceratophyllum demersum HOM05D001339 ORTHO05D003609 1.4e-15 88.6 498 27.3
Mapoly0025s0136 Marchantia polymorpha HOM05D006718 ORTHO05D008492 7.0e-12 76.3 258 30.2
CSS0030010 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 1.6e-11 75.1 272 30.5
Pp3c27_4140 Physcomitrium patens HOM05D006718 ORTHO05D008492 4.6e-11 73.6 108 40.7
BcaB05g23323 Brassica carinata HOM05D006718 ORTHO05D008492 3.3e-09 67.4 126 41.3
AagrBONN_evm.TU.Sc2ySwM_344.1162 Anthoceros agrestis HOM05D006718 ORTHO05D008492 1.4e-07 62.0 236 27.5
Psat2g067120 Pisum sativum HOM05D006718 ORTHO05D008492 1.8e-07 61.6 114 44.7


User provided reference genes

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