Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.0e-276 956.1 476 100.0
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 6.2e-237 823.9 476 84.9
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.1e-232 808.9 478 82.6
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 2.3e-231 805.4 479 82.5
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 3.0e-231 805.1 478 82.4
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.9e-230 802.4 478 82.4
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 4.0e-228 794.7 478 80.8
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 2.6e-227 792.0 480 80.8
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.7e-226 789.3 479 80.4
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 3.8e-226 788.1 478 79.5
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 3.8e-226 788.1 478 79.5
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 2.7e-224 781.9 506 76.5
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 5.1e-223 777.7 481 78.6
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 6.6e-223 777.3 479 78.9
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 3.3e-222 775.0 479 78.5
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 7.4e-222 773.9 479 78.3
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 9.6e-222 773.5 478 79.3
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 1.6e-221 772.7 490 78.2
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 2.8e-221 771.9 478 79.5
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 2.4e-220 768.8 479 78.3
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 4.5e-219 764.6 479 77.0
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 5.8e-219 764.2 481 77.5
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.5e-216 755.0 484 77.3
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 2.3e-215 752.3 478 76.6
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.5e-214 749.6 481 75.7
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 2.5e-214 748.8 480 76.5
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.8e-213 744.6 483 75.8
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 4.8e-213 744.6 485 75.5
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 6.2e-213 744.2 484 75.6
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 8.1e-213 743.8 480 74.6
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 4.0e-212 741.5 483 75.4
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 5.3e-212 741.1 483 75.8
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-211 740.0 483 75.4
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 2.6e-211 738.8 477 74.6
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 4.5e-211 738.0 477 75.9
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.3e-210 736.5 478 73.8
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 1.7e-210 736.1 479 74.5
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 1.7e-210 736.1 477 74.8
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.7e-210 736.1 477 74.4
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 2.2e-210 735.7 495 73.5
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.2e-210 735.7 483 73.5
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.2e-210 735.7 477 75.9
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 2.9e-210 735.3 477 76.1
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 4.9e-210 734.6 480 75.0
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.1e-209 733.4 485 73.6
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.4e-209 733.0 479 74.1
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 2.5e-209 732.3 477 73.8
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 9.3e-209 730.3 477 74.0
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.2e-208 729.9 479 73.7
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 6.0e-208 727.6 484 74.2
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.8e-207 726.1 480 73.5
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 3.0e-207 725.3 482 73.7
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 5.1e-207 724.5 476 75.4
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 6.7e-207 724.2 480 73.3
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.5e-206 723.0 480 72.5
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.5e-206 723.0 477 73.2
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 2.5e-206 722.2 480 73.3
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 4.3e-206 721.5 477 72.5
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 5.7e-206 721.1 480 73.3
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 5.7e-206 721.1 480 73.3
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 5.7e-206 721.1 481 72.8
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 9.6e-206 720.3 480 72.5
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.3e-205 719.9 476 73.7
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.6e-205 719.5 480 72.9
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.6e-205 719.5 483 73.1
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 2.1e-205 719.2 480 72.1
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 3.7e-205 718.4 480 73.1
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 1.8e-204 716.1 480 71.7
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 4.1e-204 714.9 479 71.6
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.0e-203 712.6 484 73.1
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 2.6e-203 712.2 481 73.6
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 3.4e-203 711.8 504 70.0
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 5.9e-203 711.1 482 72.4
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 5.9e-203 711.1 480 73.1
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 7.6e-203 710.7 482 72.8
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 7.6e-203 710.7 569 64.9
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 1.0e-202 710.3 481 73.4
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 1.0e-202 710.3 476 72.9
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.3e-202 709.9 492 70.9
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 1.3e-202 709.9 480 73.1
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.7e-202 709.5 443 76.5
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 2.9e-202 708.8 517 68.7
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 2.9e-202 708.8 476 73.1
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 5.0e-202 708.0 476 72.7
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 2.5e-201 705.7 476 73.9
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 7.2e-201 704.1 477 73.8
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 2.7e-200 702.2 469 73.8
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 3.5e-200 701.8 415 80.2
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 6.1e-200 701.0 507 69.4
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 3.0e-199 698.7 496 69.6
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 7.7e-195 684.1 477 72.3
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 5.0e-194 681.4 488 70.5
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.9e-193 679.5 479 67.8
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 3.2e-193 678.7 476 69.3
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 3.6e-192 675.2 487 69.6
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 3.0e-191 672.2 481 70.1
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 6.7e-191 671.0 477 69.0
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.5e-190 669.8 480 65.8
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.5e-190 669.1 487 68.6
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 1.1e-188 663.7 479 65.8
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 5.3e-188 661.4 517 67.5
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 5.9e-187 657.9 478 66.1
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 3.8e-186 655.2 497 66.0
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.1e-185 653.7 465 70.8
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 7.9e-184 647.5 429 71.8
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.0e-183 647.1 430 74.2
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.5e-182 643.3 415 73.7
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.2e-176 623.6 479 65.6
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 4.5e-171 605.1 481 62.6
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 5.9e-171 604.7 560 58.4
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 9.8e-166 587.4 488 60.2
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 6.3e-165 584.7 475 60.6
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 1.4e-164 583.6 424 69.1
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 1.2e-163 580.5 490 59.2
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.0e-158 563.1 413 68.5
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.2e-155 553.9 475 56.6
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.8e-154 548.9 357 77.0
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 3.4e-150 535.8 478 59.4
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.4e-148 530.4 497 58.4
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.2e-99 367.9 253 67.2
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.3e-98 364.4 182 94.5
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.3e-97 359.4 597 38.0
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 9.0e-95 351.7 522 41.8
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 2.9e-93 346.7 263 66.5
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 5.0e-85 319.3 381 50.9
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.4e-84 317.8 211 76.3
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 5.3e-79 299.3 175 83.4
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.5e-76 290.4 221 61.5
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.3e-74 283.9 255 56.9
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.3e-72 278.1 546 36.4
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.7e-69 267.7 181 79.0
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 6.7e-66 255.8 266 51.1
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 1.8e-55 221.1 432 35.2
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 2.0e-54 217.6 477 32.7
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.4e-50 204.9 171 63.2
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 3.5e-46 190.3 384 33.9
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 7.5e-41 172.6 453 29.8
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.1e-39 167.2 453 27.2
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.0e-37 162.2 212 46.7
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 4.3e-36 156.8 221 42.5
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-21 108.6 181 43.6
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.4e-15 87.8 119 42.0
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 3.2e-15 87.4 65 75.4
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.3e-13 82.0 65 70.8
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 3.0e-13 80.9 63 68.3
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-12 79.0 68 54.4
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 1.8e-10 71.6 58 51.7
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 7.6e-09 66.2 67 52.2
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 4.1e-07 60.5 69 53.6
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 5.4e-07 60.1 68 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 7.1e-07 59.7 66 48.5


User provided reference genes

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