Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 4.9e-296 1020.4 515 100.0
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 4.2e-239 831.2 515 82.7
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 5.5e-215 751.1 518 74.7
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 6.1e-214 747.7 519 73.8
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 7.5e-212 740.7 518 73.2
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.3e-211 740.0 518 73.2
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 4.8e-211 738.0 518 73.2
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 1.1e-210 736.9 519 74.2
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 2.4e-210 735.7 516 74.4
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 4.5e-209 731.5 519 71.9
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 3.8e-208 728.4 518 73.6
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 1.1e-207 726.9 519 72.3
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 4.2e-207 724.9 517 73.3
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.0e-205 720.3 513 72.9
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 3.4e-204 715.3 522 72.6
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 1.3e-203 713.4 517 72.0
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 5.0e-200 701.4 523 70.7
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 1.5e-199 699.9 521 71.4
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 5.5e-199 698.0 521 71.0
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 7.2e-199 697.6 514 71.2
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 2.1e-198 696.0 517 71.8
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 2.1e-198 696.0 526 68.6
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 4.9e-195 684.9 522 69.5
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 6.3e-195 684.5 522 68.2
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 2.4e-194 682.6 520 69.4
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 4.1e-194 681.8 536 68.8
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 9.2e-194 680.6 518 70.1
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 1.6e-193 679.9 517 69.6
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 2.3e-192 676.0 517 69.4
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 2.3e-192 676.0 517 69.4
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 5.0e-192 674.9 520 68.8
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 6.6e-192 674.5 515 69.7
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 8.6e-192 674.1 514 68.7
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 1.1e-191 673.7 520 68.8
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 1.5e-191 673.3 520 67.9
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.5e-191 673.3 520 68.5
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.9e-191 672.9 515 69.3
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 3.3e-191 672.2 521 68.7
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 5.6e-191 671.4 519 69.4
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 1.6e-190 669.8 522 68.8
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.0e-189 667.2 522 68.2
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 1.8e-189 666.4 518 69.3
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 2.3e-189 666.0 518 68.1
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 4.0e-189 665.2 517 68.7
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 8.9e-189 664.1 520 69.0
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 3.4e-188 662.1 508 69.1
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 5.8e-188 661.4 520 67.7
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 7.5e-188 661.0 524 69.3
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 7.5e-188 661.0 520 67.9
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 7.5e-188 661.0 520 68.1
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 7.5e-188 661.0 515 68.5
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 2.2e-187 659.4 523 67.7
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 3.7e-187 658.7 519 68.4
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 1.4e-186 656.8 515 68.7
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.4e-186 656.8 524 67.7
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 3.2e-186 655.6 518 67.6
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.2e-185 653.7 519 66.9
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 1.6e-185 653.3 509 67.6
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 4.6e-185 651.7 518 67.8
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 1.3e-184 650.2 517 69.2
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.3e-184 650.2 516 67.8
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 8.6e-184 647.5 507 67.1
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 1.5e-183 646.7 511 67.3
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 2.5e-183 646.0 510 67.5
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 5.6e-183 644.8 525 67.2
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 2.8e-182 642.5 507 66.7
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 2.8e-182 642.5 526 65.4
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 2.8e-182 642.5 516 67.2
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 6.2e-182 641.3 516 66.5
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 5.2e-181 638.3 516 66.7
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 2.6e-180 636.0 522 65.1
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.4e-180 635.6 520 67.3
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 4.4e-180 635.2 534 66.1
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 4.4e-180 635.2 528 63.6
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 9.8e-180 634.0 518 65.1
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 1.9e-178 629.8 518 63.5
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.9e-178 629.8 527 64.7
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 4.1e-178 628.6 509 66.4
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 1.2e-177 627.1 509 66.8
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.2e-177 627.1 515 65.8
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 1.6e-177 626.7 516 65.9
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 4.6e-177 625.2 522 64.2
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.0e-176 624.0 516 65.9
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.3e-176 622.9 516 65.7
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 5.1e-176 621.7 509 66.2
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 1.1e-175 620.5 511 65.6
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 2.1e-174 616.3 522 64.8
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 2.8e-174 615.9 518 64.5
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 3.6e-174 615.5 507 65.3
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 3.6e-174 615.5 524 65.1
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 8.1e-174 614.4 507 65.1
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.5e-172 610.1 470 69.6
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 3.4e-172 609.0 525 61.5
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 2.4e-170 602.8 521 62.6
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 9.2e-170 600.9 526 62.5
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 1.2e-169 600.5 525 61.9
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.1e-167 594.0 514 63.6
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 4.3e-167 592.0 470 65.5
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 1.2e-161 573.9 523 59.8
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.5e-159 567.0 515 60.4
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 4.3e-159 565.5 534 58.1
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 9.0e-157 557.8 534 57.5
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 1.7e-152 543.5 462 63.4
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 8.1e-150 534.6 517 60.0
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 1.0e-144 517.7 525 55.8
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 7.4e-143 511.5 522 56.3
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 2.8e-142 509.6 522 55.9
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 6.2e-142 508.4 521 56.4
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 1.9e-135 486.9 535 53.3
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 4.9e-131 472.2 485 55.9
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 3.7e-126 456.1 514 53.7
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 6.5e-123 445.3 528 52.1
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 4.2e-122 442.6 521 51.6
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 1.4e-120 437.6 541 49.7
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 5.0e-115 419.1 306 69.6
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 2.9e-107 393.3 512 47.5
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 8.5e-99 365.2 297 67.3
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 5.7e-95 352.4 518 46.7
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 3.5e-92 343.2 574 41.1
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 2.1e-60 237.7 285 48.8
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 9.2e-53 212.2 201 62.2
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 2.7e-52 210.7 344 41.6
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 5.6e-42 176.4 279 41.6
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 1.5e-26 125.2 452 30.1
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 1.4e-24 118.6 493 26.8
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.0e-24 117.1 80 70.0
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 1.1e-18 99.0 102 53.9
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 3.7e-17 94.0 80 55.0
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.8e-15 86.7 65 66.2
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 1.3e-14 85.5 64 62.5
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 6.5e-14 83.2 62 64.5
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 3.1e-08 64.3 559 24.2
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 5.3e-08 63.5 81 50.6


User provided reference genes

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