Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 0.0e+00 1081.2 552 100.0
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 8.4e-278 959.9 549 86.0
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 4.3e-266 921.0 551 82.0
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 4.3e-266 921.0 553 83.2
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 1.6e-265 919.1 550 82.2
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.5e-263 912.5 553 82.6
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 4.5e-263 911.0 548 81.6
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 4.9e-262 907.5 553 82.1
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 1.9e-261 905.6 553 81.6
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 3.2e-261 904.8 556 80.8
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 2.7e-260 901.7 548 82.3
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 6.0e-260 900.6 561 79.9
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 3.0e-259 898.3 561 79.3
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 3.2e-253 878.2 555 78.2
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 5.5e-253 877.5 555 78.4
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 9.3e-253 876.7 555 78.6
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 1.5e-250 869.4 555 77.7
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 2.5e-250 868.6 551 79.5
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 1.6e-249 865.9 514 83.1
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.4e-248 862.8 558 78.0
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 1.4e-248 862.8 556 77.2
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 1.8e-248 862.4 560 77.7
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 2.4e-248 862.1 560 77.7
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 8.5e-246 853.6 515 82.5
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 4.6e-244 847.8 514 81.5
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 7.9e-244 847.0 555 75.3
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.0e-243 846.7 564 74.8
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 5.1e-243 844.3 511 81.0
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 2.5e-242 842.0 550 77.3
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 3.3e-242 841.6 555 76.4
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 4.3e-242 841.3 511 80.8
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 3.7e-241 838.2 554 75.5
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 4.8e-241 837.8 511 80.4
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 8.2e-241 837.0 539 77.2
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 8.2e-241 837.0 559 74.6
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.1e-240 836.6 511 80.6
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.1e-240 836.6 516 80.2
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 9.1e-240 833.6 537 78.4
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 3.4e-239 831.6 512 80.3
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.0e-238 830.1 549 75.6
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 5.0e-238 827.8 550 75.5
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 6.5e-238 827.4 512 80.1
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.1e-237 826.6 550 75.6
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 3.2e-237 825.1 550 75.1
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 7.2e-237 823.9 563 73.0
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 2.7e-236 822.0 516 77.7
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.4e-235 819.7 530 76.4
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 2.3e-235 818.9 550 74.5
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 3.9e-235 818.1 506 79.2
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 3.9e-235 818.1 558 73.7
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.1e-234 816.6 519 77.1
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 2.6e-234 815.5 515 80.0
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 3.3e-234 815.1 515 78.4
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 1.3e-233 813.1 550 73.6
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 2.8e-233 812.0 537 76.4
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 1.8e-232 809.3 516 76.7
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 2.4e-232 808.9 550 74.2
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 4.1e-232 808.1 524 75.2
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 4.1e-232 808.1 548 73.0
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 5.3e-232 807.7 551 73.1
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 9.1e-232 807.0 559 73.5
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 2.0e-231 805.8 550 72.2
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 2.6e-231 805.4 515 77.5
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 4.5e-231 804.7 551 73.1
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 7.7e-231 803.9 535 74.6
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 5.0e-230 801.2 562 70.3
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 8.5e-230 800.4 552 72.3
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.5e-229 799.7 549 71.9
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.5e-229 799.7 550 72.9
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 1.5e-229 799.7 551 72.6
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 4.0e-227 791.6 548 72.6
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 4.0e-227 791.6 522 75.3
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 5.7e-226 787.7 550 72.0
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 2.4e-224 782.3 519 73.6
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 3.1e-224 781.9 545 71.7
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 1.6e-223 779.6 551 70.4
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 1.6e-223 779.6 528 72.3
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 3.5e-223 778.5 545 71.2
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 1.0e-222 776.9 519 73.2
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.7e-222 776.2 590 67.6
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 2.9e-222 775.4 545 71.7
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 3.2e-221 771.9 518 74.1
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 5.5e-221 771.2 549 70.9
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 7.2e-221 770.8 543 71.1
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 2.0e-218 762.7 561 67.0
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.6e-218 762.3 469 77.2
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 3.4e-218 761.9 543 70.2
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 5.7e-218 761.1 550 70.2
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 5.7e-218 761.1 559 68.5
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 7.5e-218 760.8 522 75.1
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 2.2e-217 759.2 550 69.8
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 4.8e-217 758.1 550 69.8
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 8.3e-217 757.3 542 71.6
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 1.8e-216 756.1 547 69.5
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.6e-215 753.1 559 68.5
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 2.7e-215 752.3 548 69.5
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 7.7e-215 750.7 559 68.2
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.0e-214 750.4 641 61.3
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 8.5e-214 747.3 538 69.7
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 1.1e-213 746.9 549 68.7
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 1.2e-212 743.4 559 67.6
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 3.6e-212 741.9 546 67.0
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 3.6e-212 741.9 546 67.0
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 3.6e-212 741.9 487 75.2
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 8.0e-212 740.7 534 69.9
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 8.0e-212 740.7 515 72.6
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.0e-211 740.3 523 70.4
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 4.0e-211 738.4 532 69.7
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 5.2e-211 738.0 572 65.6
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.2e-210 736.9 560 66.2
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 5.7e-210 734.6 561 66.0
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 7.5e-210 734.2 565 69.4
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 4.1e-208 728.4 402 86.1
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 7.7e-207 724.2 544 68.9
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 1.0e-206 723.8 463 75.6
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 3.0e-203 712.2 541 66.7
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 3.5e-199 698.7 551 68.6
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.3e-198 696.0 564 64.5
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.8e-195 686.4 506 68.6
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.0e-191 672.9 402 79.6
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 1.5e-189 666.8 563 60.4
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 4.3e-189 665.2 567 60.8
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 3.3e-173 612.5 500 62.0
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.7e-169 600.1 537 59.6
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 1.9e-168 596.7 552 57.4
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 3.5e-167 592.4 502 60.6
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 6.0e-167 591.7 550 58.9
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 8.4e-161 571.2 434 68.7
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 2.7e-159 566.2 549 54.8
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 4.5e-154 548.9 545 53.8
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 8.4e-153 544.7 374 74.3
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 3.3e-149 532.7 427 66.0
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 8.7e-142 508.1 354 71.2
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 2.2e-137 493.4 568 48.9
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.9e-137 493.0 478 54.8
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 5.5e-136 488.8 563 50.8
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.3e-134 484.2 545 49.0
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 5.9e-130 468.8 375 64.5
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.4e-120 437.6 389 61.4
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 3.7e-108 396.4 306 59.8
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 1.7e-97 360.9 536 39.7
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 1.5e-96 357.8 502 43.2
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 1.8e-91 340.9 323 59.1
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 4.6e-66 256.5 165 79.4
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 4.4e-61 240.0 461 33.0
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 2.3e-57 227.6 314 45.2
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 1.6e-55 221.5 136 84.6
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 8.1e-55 219.2 238 52.1
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 6.6e-49 199.5 466 32.2
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 1.5e-48 198.4 163 70.6
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 2.1e-47 194.5 415 32.8
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 4.0e-46 190.3 91 96.7
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 1.3e-44 185.3 97 87.6
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 5.4e-43 179.9 373 34.9
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 7.1e-43 179.5 170 53.5
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 6.0e-42 176.4 118 72.9
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 1.1e-40 172.2 155 58.7
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.5e-40 171.8 111 77.5
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 4.5e-37 160.2 407 29.7
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 6.7e-25 119.8 86 65.1
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.2e-15 88.2 40 100.0
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 3.4e-13 80.9 40 90.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 3.4e-13 80.9 48 75.0
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 1.1e-11 75.9 158 32.9
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 1.4e-09 68.9 32 93.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 2.3e-09 68.2 33 84.8
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 4.4e-08 63.9 98 40.8
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 3.7e-07 60.8 187 27.8
HPP92_028318 Vanilla planifolia HOM05D005323 ORTHO05D006820 3.7e-07 60.8 187 27.3
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 3.1e-06 57.8 191 26.2


User provided reference genes

Program Settings