Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.8e-304 1048.5 553 100.0
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.3e-234 815.1 543 79.4
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.6e-220 769.6 547 74.4
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 4.7e-220 768.1 543 72.4
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 2.3e-219 765.8 541 74.9
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 5.2e-219 764.6 530 75.3
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 8.8e-219 763.8 541 73.9
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.5e-218 763.1 549 71.6
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 2.4e-216 755.7 549 71.4
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.2e-215 753.4 543 72.0
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.7e-215 752.3 541 72.6
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 2.7e-215 752.3 543 71.5
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 2.7e-215 752.3 541 72.3
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 2.7e-215 752.3 540 72.6
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.5e-215 751.9 543 71.5
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.0e-214 750.4 541 73.0
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.8e-214 748.4 543 72.4
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 6.6e-214 747.7 541 71.0
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 5.5e-213 744.6 546 70.5
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 1.2e-212 743.4 541 72.1
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 2.8e-212 742.3 541 72.5
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 2.8e-212 742.3 545 71.2
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 8.0e-212 740.7 541 71.5
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.5e-210 736.5 538 70.8
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.3e-209 733.4 541 71.7
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 9.2e-208 727.2 582 65.8
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.0e-206 723.8 528 72.3
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.7e-206 723.0 541 68.2
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 4.3e-205 718.4 582 64.9
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 7.3e-205 717.6 542 67.9
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.6e-204 716.5 549 68.5
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-204 716.5 528 71.8
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 2.8e-204 715.7 538 68.8
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 8.9e-203 710.7 543 67.4
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.2e-202 710.3 543 67.2
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 9.8e-202 707.2 542 68.6
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 1.7e-201 706.4 542 67.3
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.9e-201 705.7 541 68.2
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 8.3e-201 704.1 541 67.1
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 8.3e-201 704.1 542 67.0
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 8.3e-201 704.1 542 67.2
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.1e-200 703.7 536 68.1
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.1e-200 703.7 542 67.5
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-200 703.4 542 68.3
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 5.4e-200 701.4 542 68.1
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 7.0e-200 701.0 542 68.1
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 4.6e-199 698.4 542 66.8
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 8.6e-198 694.1 541 68.4
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 7.3e-197 691.0 542 66.2
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 9.5e-197 690.6 536 66.6
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 5.8e-194 681.4 545 64.2
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 2.2e-193 679.5 543 65.4
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.4e-192 676.8 554 63.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 5.4e-192 674.9 572 62.4
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 9.2e-192 674.1 554 63.0
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 9.2e-192 674.1 537 65.2
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 3.5e-191 672.2 547 64.2
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 6.6e-190 667.9 548 64.2
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 3.3e-189 665.6 541 63.0
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 2.1e-188 662.9 545 64.2
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 2.8e-188 662.5 535 63.6
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 2.8e-188 662.5 509 68.0
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 3.6e-188 662.1 535 65.6
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 6.2e-188 661.4 535 65.4
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.1e-187 660.6 542 63.8
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 5.2e-187 658.3 528 64.2
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 1.5e-186 656.8 543 64.1
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 4.9e-185 651.7 545 61.5
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 4.9e-185 651.7 527 66.0
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-184 650.6 526 67.3
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 2.4e-184 649.4 543 61.9
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 3.2e-184 649.0 548 62.8
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.1e-184 648.7 538 63.2
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 7.1e-184 647.9 548 62.6
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.7e-183 646.0 586 58.5
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.0e-182 644.0 551 61.0
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 1.0e-182 644.0 548 61.1
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.7e-182 643.3 541 63.6
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 2.1e-180 636.3 548 59.7
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 2.1e-180 636.3 543 60.8
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 2.8e-180 636.0 549 59.2
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 6.8e-179 631.3 549 58.8
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 6.8e-179 631.3 549 58.8
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 8.9e-179 630.9 547 62.2
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.2e-178 630.6 543 60.0
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 2.6e-178 629.4 549 59.0
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 6.4e-177 624.8 534 60.5
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.2e-175 620.5 538 59.1
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 6.0e-175 618.2 543 58.7
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 7.8e-175 617.8 452 72.1
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 1.7e-174 616.7 538 58.7
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 3.0e-174 615.9 512 63.5
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 3.0e-174 615.9 543 57.8
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 5.1e-174 615.1 543 58.0
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 2.8e-172 609.4 528 60.0
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.1e-171 607.4 554 56.3
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 3.1e-171 605.9 543 57.5
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 1.2e-170 604.0 545 59.8
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 5.8e-170 601.7 545 59.6
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 5.8e-170 601.7 552 58.9
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 6.0e-167 591.7 465 67.5
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 6.6e-166 588.2 538 56.3
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 3.5e-159 565.8 456 65.1
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.1e-151 540.0 400 71.2
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.5e-149 533.1 433 65.6
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 7.9e-143 511.5 548 53.5
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 6.7e-142 508.4 529 53.9
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.9e-141 506.9 536 51.3
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 7.4e-141 505.0 547 50.6
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 9.7e-141 504.6 433 62.6
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.0e-138 496.9 539 50.5
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 6.7e-134 481.9 395 66.1
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 1.1e-131 474.6 546 48.4
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 6.3e-116 422.2 547 45.2
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.7e-113 414.1 545 41.7
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.6e-103 380.9 538 40.7
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 4.7e-103 379.4 281 69.4
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 6.1e-103 379.0 538 40.5
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.5e-101 374.4 541 38.3
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 3.4e-101 373.2 538 41.8
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.5e-88 331.3 442 47.1
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.5e-85 321.2 246 69.5
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 8.3e-84 315.5 385 48.6
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 4.7e-79 299.7 337 51.3
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 8.1e-79 298.9 255 65.1
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.1e-62 245.4 383 42.8
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 7.8e-58 229.2 379 41.7
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 1.4e-54 218.4 251 50.6
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 6.2e-47 193.0 306 42.2
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.4e-43 181.8 139 72.7
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.2e-42 178.7 327 36.1
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 2.7e-42 177.6 291 38.8
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 2.3e-41 174.5 180 53.9
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 3.9e-41 173.7 138 68.1
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.8e-38 164.9 217 47.9
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 4.0e-38 163.7 257 41.6
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 9.0e-30 136.0 97 72.2
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 4.5e-29 133.7 96 75.0
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 1.0e-28 132.5 108 64.8
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 8.7e-25 119.4 97 59.8
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.3e-24 117.1 134 56.0
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-23 115.2 132 54.5
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 2.8e-23 114.4 70 80.0
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.8e-23 114.4 132 56.8
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.4e-22 112.1 148 52.0
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 1.8e-22 111.7 404 26.2
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 4.5e-21 107.1 90 64.4
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 4.5e-21 107.1 116 56.9
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 3.8e-20 104.0 78 71.8
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.1e-18 96.7 69 75.4
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-17 95.1 67 77.6
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 2.3e-17 94.7 75 64.0
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 1.4e-11 75.5 61 57.4
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-10 72.4 56 66.1
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 2.7e-10 71.2 161 31.1
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 3.6e-10 70.9 82 46.3
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.4e-09 68.9 64 56.2
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 8.8e-09 66.2 69 43.5
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 4.4e-08 63.9 69 43.5
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 5.7e-08 63.5 54 51.9
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 7.4e-08 63.2 52 59.6
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 9.7e-08 62.8 53 66.0


User provided reference genes

Program Settings