Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 0.0e+00 1117.1 563 100.0
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 3.0e-254 881.7 533 83.5
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.1e-251 873.2 542 80.6
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.4e-251 872.8 534 82.4
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 7.5e-250 867.1 530 82.6
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 4.9e-249 864.4 531 81.5
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 4.9e-249 864.4 526 82.5
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.9e-248 862.4 531 81.2
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.6e-247 859.4 541 81.7
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 7.8e-247 857.1 532 82.1
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 3.3e-245 851.7 534 81.3
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 4.3e-245 851.3 525 81.0
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.3e-241 839.7 527 79.1
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 2.2e-241 839.0 530 80.4
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 8.4e-241 837.0 534 80.1
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.7e-239 832.0 534 77.5
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.8e-236 822.0 522 78.0
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 8.1e-236 820.5 530 78.3
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.8e-235 819.3 526 77.0
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 9.0e-235 817.0 524 77.9
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 1.5e-234 816.2 520 78.1
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 7.6e-234 813.9 529 78.3
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 9.9e-234 813.5 533 76.9
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.2e-233 812.4 525 77.7
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 1.1e-232 810.1 524 79.0
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 7.1e-232 807.4 534 76.8
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 7.1e-232 807.4 534 76.8
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 7.1e-232 807.4 534 76.8
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 1.6e-231 806.2 511 78.5
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 2.1e-231 805.8 534 77.0
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.3e-230 803.1 538 76.8
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.3e-230 803.1 529 75.6
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 2.3e-230 802.4 537 76.7
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 6.6e-230 800.8 536 75.7
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.5e-229 799.7 529 75.2
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.5e-229 798.9 535 75.3
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 9.6e-229 797.0 537 75.8
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.3e-228 796.6 538 75.3
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.3e-228 796.6 542 75.3
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.6e-228 796.2 542 75.3
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.6e-228 796.2 542 75.3
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 2.1e-228 795.8 532 76.5
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 2.1e-228 795.8 533 77.1
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.8e-228 795.4 542 74.0
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 3.6e-228 795.0 537 76.2
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 3.6e-228 795.0 538 75.1
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 6.2e-228 794.3 562 71.9
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 6.2e-228 794.3 537 75.6
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.1e-227 793.5 526 74.7
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.4e-227 793.1 538 74.7
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 3.1e-227 792.0 533 73.9
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 4.0e-227 791.6 541 75.0
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.0e-227 791.6 519 77.6
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 5.3e-227 791.2 539 75.0
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 5.3e-227 791.2 542 74.2
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.2e-226 790.0 520 75.6
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.5e-226 789.6 536 76.5
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.0e-226 789.3 536 74.1
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 3.4e-226 788.5 537 74.7
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 5.8e-226 787.7 541 74.7
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 7.6e-226 787.3 532 75.4
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 4.9e-225 784.6 521 76.8
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 8.4e-225 783.9 539 72.5
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.1e-224 783.5 524 76.5
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.1e-224 783.5 462 83.5
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.4e-224 783.1 537 74.3
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 1.6e-223 779.6 530 73.2
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 4.6e-223 778.1 521 75.2
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 6.0e-223 777.7 538 72.3
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 7.9e-223 777.3 462 84.4
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 1.0e-222 776.9 476 81.1
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.8e-222 776.2 529 73.7
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 1.8e-222 776.2 535 73.6
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 5.1e-222 774.6 562 71.4
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 5.1e-222 774.6 514 76.7
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.3e-220 770.0 539 71.8
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.1e-220 769.2 530 74.0
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 2.8e-220 768.8 528 75.4
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.1e-219 766.9 539 71.6
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 9.9e-218 760.4 507 76.1
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 2.2e-217 759.2 524 73.1
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.9e-217 758.8 528 73.7
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 8.4e-217 757.3 500 75.0
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 1.4e-216 756.5 520 72.5
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.3e-214 750.0 514 74.7
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 2.3e-214 749.2 479 78.5
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 3.0e-214 748.8 537 68.0
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 5.1e-214 748.0 479 78.3
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.5e-213 746.5 530 67.5
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 3.3e-213 745.3 537 68.9
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 9.6e-213 743.8 517 74.3
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.6e-212 743.0 526 68.8
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.2e-210 736.9 537 68.7
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 2.0e-210 736.1 525 69.7
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 2.6e-210 735.7 550 67.6
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 5.8e-210 734.6 531 67.4
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 5.8e-210 734.6 435 83.7
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.0e-209 733.8 549 67.6
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.3e-209 733.4 530 71.7
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.7e-209 733.0 531 67.8
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 3.8e-209 731.9 531 71.4
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 2.5e-205 719.2 524 67.7
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 7.4e-205 717.6 525 68.2
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 3.7e-204 715.3 525 67.8
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.8e-203 713.0 523 66.2
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 8.8e-198 694.1 530 64.9
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.1e-195 687.2 465 71.4
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.5e-194 683.3 456 73.5
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.7e-193 679.9 449 77.7
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 7.2e-192 674.5 523 62.9
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 2.8e-188 662.5 427 78.2
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 6.3e-188 661.4 543 60.4
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 2.9e-185 652.5 531 61.8
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.4e-184 650.2 526 61.2
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 4.4e-181 638.6 384 83.3
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 6.1e-175 618.2 391 77.0
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 3.7e-172 609.0 553 56.4
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.0e-169 598.6 386 76.4
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.6e-167 593.6 460 63.7
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.4e-163 580.5 525 58.5
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.2e-159 567.4 391 70.8
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.0e-153 547.7 386 69.2
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 2.3e-150 536.6 363 74.4
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 2.2e-148 530.0 317 82.0
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 5.6e-144 515.4 355 72.7
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.2e-133 481.1 343 69.1
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 5.4e-131 472.2 469 49.5
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 3.0e-129 466.5 522 46.4
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.4e-125 453.0 455 49.7
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.4e-118 431.0 555 43.1
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 1.1e-110 404.8 586 36.9
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 2.1e-103 380.6 223 87.0
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.1e-94 351.7 257 71.2
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 1.2e-74 285.0 194 73.2
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.5e-69 266.5 198 69.2
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 3.0e-65 253.8 184 71.2
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 4.0e-65 253.4 151 84.8
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 1.3e-55 221.9 171 63.2
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 5.9e-53 213.0 159 67.9
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 3.8e-52 210.3 140 74.3
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 4.9e-47 193.4 149 67.8
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 5.9e-45 186.4 159 56.0
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-43 182.2 132 67.4
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 4.7e-34 150.2 97 76.3
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 4.4e-32 143.7 149 54.4
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.1e-27 129.0 107 62.6
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 5.2e-25 120.2 74 78.4
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.9e-22 111.7 489 23.1
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 4.1e-22 110.5 463 24.0
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 2.3e-20 104.8 71 69.0
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 3.5e-13 80.9 67 58.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 3.5e-13 80.9 67 58.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 1.2e-08 65.9 46 63.0
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 8.4e-07 59.7 43 65.1
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.1e-06 59.3 46 60.9
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 9.3e-06 56.2 46 58.7


User provided reference genes

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