Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 0.0e+00 1168.3 592 100.0
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 8.7e-265 916.8 585 77.6
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.9e-264 915.6 597 78.1
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.0e-260 903.3 596 77.2
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.9e-259 899.0 596 75.3
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 1.9e-256 889.0 582 74.2
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 6.3e-255 884.0 586 76.8
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.4e-254 882.1 584 74.7
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 3.1e-246 855.1 621 72.0
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 3.1e-246 855.1 591 72.4
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 7.0e-246 854.0 589 73.3
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 5.9e-245 850.9 617 70.7
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.7e-242 842.0 589 71.5
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.0e-241 840.1 589 71.1
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 4.4e-240 834.7 593 70.8
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 2.0e-237 825.9 590 70.7
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 2.6e-237 825.5 593 71.2
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.3e-236 823.2 601 69.2
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 8.5e-236 820.5 594 70.2
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 2.1e-234 815.8 587 69.8
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 2.7e-234 815.5 591 69.7
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.8e-233 812.8 593 69.0
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.3e-233 812.4 597 69.2
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 4.0e-233 811.6 588 70.1
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 5.2e-233 811.2 588 69.6
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 2.0e-232 809.3 588 69.2
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 9.7e-232 807.0 589 69.3
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 6.3e-231 804.3 591 69.2
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 8.2e-231 803.9 585 69.6
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.4e-230 803.1 591 69.0
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 3.1e-230 802.0 595 69.7
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 3.1e-230 802.0 586 68.6
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.6e-229 799.7 591 69.0
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 2.7e-229 798.9 597 68.3
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 6.5e-228 794.3 598 67.9
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 3.2e-227 792.0 520 75.8
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 5.5e-227 791.2 596 67.6
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 5.5e-227 791.2 590 68.3
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 7.2e-227 790.8 588 67.7
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.2e-226 790.0 591 66.5
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 8.0e-226 787.3 586 67.6
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.8e-225 786.2 578 67.5
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 2.3e-225 785.8 588 66.7
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 8.8e-225 783.9 590 67.8
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 1.2e-224 783.5 522 74.7
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 2.0e-224 782.7 591 68.5
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.0e-224 782.7 590 67.8
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 5.7e-224 781.2 591 65.3
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.7e-223 779.6 789 55.1
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 8.3e-223 777.3 584 67.6
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 4.1e-222 775.0 608 65.6
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 3.5e-221 771.9 584 67.0
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 4.5e-221 771.5 592 67.7
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 2.3e-220 769.2 610 63.8
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 2.3e-220 769.2 585 67.7
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 2.3e-220 769.2 573 67.0
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 8.6e-220 767.3 590 64.2
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 3.6e-218 761.9 587 67.0
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 6.1e-218 761.1 603 65.0
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.0e-217 760.4 599 65.4
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 8.9e-217 757.3 589 66.9
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.8e-215 752.3 573 67.0
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 6.3e-215 751.1 603 62.7
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 1.1e-214 750.4 591 63.8
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.4e-214 750.0 646 61.6
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.8e-214 749.6 588 62.9
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 3.1e-214 748.8 593 62.9
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 4.1e-214 748.4 596 62.2
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 7.0e-214 747.7 599 63.8
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 7.0e-214 747.7 588 62.9
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 2.0e-213 746.1 591 62.6
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.7e-213 745.7 588 62.6
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 2.7e-213 745.7 599 63.6
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 3.5e-213 745.3 590 66.3
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 5.9e-213 744.6 596 61.9
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 8.6e-212 740.7 590 61.7
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 7.3e-211 737.6 516 69.6
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 5.2e-209 731.5 579 63.0
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 2.0e-208 729.6 545 67.9
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 9.2e-206 720.7 577 62.4
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 1.2e-205 720.3 578 62.5
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 3.3e-203 712.2 591 62.1
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 2.3e-201 706.1 582 62.9
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 4.4e-200 701.8 560 65.0
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 9.2e-198 694.1 524 65.1
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 2.1e-189 666.4 557 61.8
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 7.8e-189 664.5 615 60.2
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.1e-187 660.6 516 64.0
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 3.1e-185 652.5 587 58.3
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.2e-183 646.4 489 66.1
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 2.7e-181 639.4 579 57.9
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.3e-175 620.5 589 55.2
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.7e-173 612.8 614 54.1
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 6.0e-165 585.1 571 53.8
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 5.1e-164 582.0 470 64.9
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.3e-162 577.4 356 80.1
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 2.2e-146 523.5 617 49.1
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 2.1e-133 480.3 371 63.1
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.2e-127 460.3 447 54.4
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 8.2e-122 441.8 506 45.8
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.0e-120 437.2 554 43.3
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 3.8e-119 433.0 356 62.1
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 3.8e-119 433.0 304 71.1
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 5.2e-116 422.5 537 42.6
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 8.8e-116 421.8 545 42.6
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.2e-100 369.4 270 67.4
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.5e-96 356.7 399 49.9
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.5e-91 341.3 279 62.0
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.2e-85 321.6 216 75.5
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 5.2e-84 316.2 216 75.9
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 2.4e-73 280.8 581 31.5
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.4e-73 279.6 292 47.6
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 3.9e-71 273.5 181 77.9
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 1.1e-70 271.9 359 39.3
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 6.9e-60 236.1 172 68.0
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 6.5e-42 176.4 123 66.7
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 1.9e-41 174.9 112 75.9
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.7e-37 160.6 125 66.4
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.5e-35 155.2 114 66.7
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 7.2e-33 146.4 112 63.4
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.3e-31 141.4 270 36.7
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 1.3e-26 125.6 98 62.2
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.1e-24 118.2 94 55.3
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.1e-24 118.2 159 41.5
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.9e-23 114.0 129 45.7
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 5.1e-23 113.6 571 22.9
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 6.7e-23 113.2 74 75.7
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 8.8e-23 112.8 215 34.0
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 2.5e-22 111.3 80 61.2
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.3e-21 109.0 80 60.0
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 1.3e-21 109.0 83 57.8
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 3.7e-21 107.5 85 60.0
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.4e-17 95.5 164 37.2
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.4e-15 89.0 106 46.2
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 6.7e-15 86.7 227 28.2
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 8.2e-13 79.7 58 72.4
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 5.9e-11 73.6 60 55.0
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.0e-10 72.8 324 24.1
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 1.7e-10 72.0 138 36.2
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 6.5e-10 70.1 109 36.7
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 3.6e-08 64.3 99 42.4
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 3.0e-07 61.2 468 24.6
Oeu032047.1 Olea europaea HOM05D005072 ORTHO05D006209 9.7e-06 56.2 64 46.9


User provided reference genes

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