Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 0.0e+00 1526.9 765 100.0
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1263.4 775 81.3
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1215.7 776 78.5
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1215.7 776 78.5
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1189.5 777 77.2
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1178.3 775 76.5
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1177.5 777 76.3
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1174.5 795 75.0
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1170.2 777 75.3
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1169.5 778 76.0
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1167.9 778 75.3
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1166.0 777 76.2
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1161.7 775 75.2
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1160.6 778 75.8
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 0.0e+00 1146.0 775 75.0
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1139.0 773 75.4
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1138.6 786 74.3
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1134.8 775 74.3
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 0.0e+00 1132.9 777 72.6
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 0.0e+00 1130.5 777 73.0
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1127.1 781 72.2
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 0.0e+00 1125.5 775 71.7
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 0.0e+00 1124.4 775 73.2
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 0.0e+00 1121.3 766 74.3
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 0.0e+00 1120.1 778 72.0
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 0.0e+00 1115.9 778 71.2
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 0.0e+00 1115.5 780 72.2
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1109.7 778 70.3
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 0.0e+00 1105.1 746 74.5
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 0.0e+00 1101.7 789 69.7
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1096.6 777 71.8
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1092.4 803 67.9
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 0.0e+00 1091.3 777 70.5
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 0.0e+00 1088.2 774 70.0
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 0.0e+00 1085.9 868 64.6
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 0.0e+00 1084.7 771 71.3
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1082.8 879 64.3
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 0.0e+00 1075.1 778 70.1
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 5.2e-312 1074.7 776 69.7
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 5.2e-312 1074.3 776 69.8
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 6.8e-310 1067.0 777 68.7
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 8.8e-310 1066.6 777 69.2
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 2.6e-309 1065.1 778 68.3
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 4.4e-309 1064.3 771 68.6
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 7.5e-309 1063.5 775 68.5
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 7.5e-309 1063.5 768 69.1
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 3.1e-307 1058.1 778 69.7
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 1.6e-306 1055.8 777 69.8
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 2.0e-306 1055.4 778 67.7
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 7.7e-306 1053.5 777 68.6
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 2.9e-305 1051.6 775 67.7
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 2.9e-305 1051.6 771 68.5
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.5e-304 1049.3 773 67.8
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.5e-304 1049.3 777 69.5
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 9.4e-304 1046.6 768 67.8
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 3.6e-303 1044.6 773 67.5
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 4.7e-303 1044.3 775 67.0
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 8.0e-303 1043.5 777 69.1
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 1.4e-302 1042.7 779 68.2
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 1.4e-302 1042.7 782 66.8
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 3.4e-301 1038.1 771 67.6
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 4.4e-301 1037.7 779 66.5
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 5.4e-299 1030.8 775 67.7
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 1.6e-298 1029.2 768 66.4
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 2.7e-298 1028.5 834 63.9
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 4.5e-298 1027.7 774 68.0
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 4.5e-298 1027.7 775 67.6
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.0e-297 1026.5 775 66.5
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.0e-297 1026.5 775 66.6
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 2.3e-297 1025.4 777 67.1
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 5.2e-294 1014.2 794 65.1
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 1.5e-293 1012.7 773 66.2
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 4.4e-293 1011.1 777 66.9
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 2.7e-290 1001.9 737 69.5
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 1.5e-288 996.1 775 65.3
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 5.6e-288 994.2 777 65.8
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 1.8e-286 989.2 721 70.9
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 4.4e-285 984.6 879 58.8
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 1.1e-283 979.9 770 64.5
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 9.8e-277 956.8 776 62.9
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 3.2e-267 925.2 785 62.2
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.6e-266 922.9 745 62.8
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 6.6e-265 917.5 782 60.6
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 7.3e-256 887.5 782 58.6
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 5.4e-251 871.3 793 57.8
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 1.0e-249 867.1 770 59.9
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.0e-217 760.8 537 71.5
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 3.1e-214 749.2 768 51.2
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.0e-209 734.2 529 71.1
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 8.8e-209 731.1 497 72.0
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 2.7e-194 682.9 479 71.8
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.1e-190 671.0 592 60.1
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 4.0e-185 652.5 765 49.2
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-175 620.9 435 69.0
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 7.5e-160 568.5 792 41.3
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 8.1e-154 548.5 781 40.8
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 7.3e-147 525.4 514 55.1
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.8e-145 518.8 404 65.3
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.5e-139 501.1 507 56.8
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 4.6e-117 426.4 739 37.1
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 4.3e-107 393.3 827 31.9
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 3.4e-104 383.6 436 51.8
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 7.2e-102 375.9 378 53.7
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.2e-101 375.2 441 49.4
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 9.1e-89 332.4 266 65.0
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 2.9e-87 327.4 373 49.9
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.2e-85 322.0 256 64.5
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.6e-85 321.6 190 75.3
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.7e-77 294.3 200 72.0
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 3.8e-71 273.9 390 39.7
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 1.7e-66 258.5 208 59.6
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.0e-55 222.6 758 26.4
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 3.9e-47 194.1 174 64.4
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 5.6e-46 190.3 318 39.3
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 4.7e-45 187.2 225 48.4
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 7.1e-41 173.3 257 38.5
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 7.6e-35 153.3 109 67.0
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 2.4e-33 148.3 455 26.4
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.5e-32 144.4 86 77.9
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 6.0e-32 143.7 166 50.0
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.8e-32 143.3 105 64.8
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.3e-31 142.5 86 76.7
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 2.3e-31 141.7 493 24.5
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.3e-30 136.7 86 74.4
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 9.6e-30 136.3 109 58.7
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.2e-29 136.0 109 66.1
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 2.8e-29 134.8 515 24.1
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 1.4e-28 132.5 109 57.8
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 2.4e-28 131.7 90 74.4
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.6e-27 126.7 79 77.2
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 9.9e-27 126.3 88 72.7
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.2e-26 125.2 85 70.6
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.4e-26 123.6 90 63.3
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 6.4e-26 123.6 61 93.4
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 8.4e-26 123.2 71 77.5
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 7.8e-24 116.7 61 88.5
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 8.1e-21 106.7 60 76.7
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 6.9e-20 103.6 152 43.4
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 2.0e-19 102.1 61 80.3
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.7e-18 99.0 55 83.6
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.4e-18 96.7 86 59.3
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.2e-16 92.8 62 67.7
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 2.1e-16 92.0 57 78.9
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 4.6e-16 90.9 80 53.8
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 1.0e-15 89.7 78 52.6
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.8e-15 89.0 55 78.2
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.8e-15 89.0 55 78.2
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.4e-12 78.6 55 63.6
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.1e-12 78.2 61 59.0
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.0e-12 76.6 55 61.8
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.5e-11 75.9 60 60.0
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.2e-09 68.2 86 45.3
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 5.5e-09 67.4 47 70.2
Eucgr.D02662 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.3e-07 62.0 82 47.6
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 3.9e-07 61.2 31 87.1


User provided reference genes

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