Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1735.3 842 100.0
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1488.4 834 84.9
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1408.7 839 78.9
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1400.2 834 79.5
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1399.8 839 78.9
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1399.0 847 77.1
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1395.2 834 79.6
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1393.3 833 79.5
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1382.5 835 78.6
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1379.8 841 78.4
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1370.9 833 77.4
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1367.1 834 77.5
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1362.1 974 69.1
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1361.7 841 77.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1358.2 841 77.1
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1347.4 832 76.3
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1347.0 833 75.2
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1342.0 833 75.4
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1339.3 833 76.4
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1333.5 839 75.2
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1332.0 844 74.9
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1330.5 838 75.2
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1328.5 832 75.5
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1327.4 834 75.8
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1326.2 844 75.1
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1319.7 835 75.2
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1316.6 831 74.7
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1315.4 843 74.4
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1315.1 843 74.5
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1313.9 832 75.8
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1313.5 836 75.2
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1313.1 836 75.2
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1311.6 832 74.4
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1311.2 836 75.1
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1311.2 834 74.9
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1310.8 833 75.4
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1310.4 839 74.3
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1310.0 835 74.9
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1309.7 832 74.4
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1309.3 832 74.0
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1308.5 842 74.8
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1308.5 839 73.7
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1308.5 832 74.8
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1307.0 842 74.9
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1304.3 836 74.8
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1303.1 834 74.3
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1302.3 835 75.2
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1299.6 838 74.5
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1298.9 827 74.2
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1298.1 831 74.0
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1295.4 839 72.7
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1294.3 833 72.4
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1292.3 835 72.9
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1288.9 841 72.2
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1288.1 833 72.6
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1287.7 831 73.6
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1286.9 845 72.9
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1286.2 837 72.4
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1280.0 837 72.3
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1280.0 873 70.6
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1280.0 840 72.6
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1277.3 834 72.2
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1273.1 834 72.4
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1268.8 833 73.9
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1255.4 785 75.9
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1253.4 842 70.7
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1247.6 831 71.5
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1246.5 834 71.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1245.7 853 69.5
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1243.4 845 70.5
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1238.0 833 70.6
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1236.1 852 70.2
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1228.0 842 69.1
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1227.2 839 70.3
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1226.1 842 70.5
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1225.7 835 70.2
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1225.7 841 70.7
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1222.6 843 70.5
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1221.8 833 70.8
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1221.8 859 69.0
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1220.3 847 70.0
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1219.9 843 70.2
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1219.5 834 70.7
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1219.1 842 70.3
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1218.8 845 70.3
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1216.8 845 69.6
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1215.3 842 70.2
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1198.3 838 70.2
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1197.2 836 69.3
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1196.4 948 62.8
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1195.6 792 71.8
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1183.7 758 74.4
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1134.4 830 64.1
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1134.0 832 64.1
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1112.1 841 63.1
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1079.7 832 62.3
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 1.5e-305 1052.7 668 74.0
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.9e-305 1052.4 840 61.8
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 4.5e-299 1031.2 662 75.5
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 2.0e-286 989.2 831 60.5
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.9e-275 951.0 582 76.5
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 2.4e-247 859.4 886 49.7
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 4.4e-246 855.1 857 49.9
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 2.4e-239 832.8 859 51.5
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 5.6e-225 785.0 834 49.4
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.4e-183 647.5 465 68.8
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.0e-182 643.7 399 73.9
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 5.4e-151 539.3 401 65.3
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 4.6e-142 509.6 367 67.3
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 3.0e-141 506.9 359 65.7
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.4e-127 461.5 264 79.9
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 6.7e-109 399.4 766 36.7
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.4e-106 391.7 230 79.1
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 2.0e-105 387.9 864 32.6
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 3.4e-105 387.1 484 46.7
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 2.5e-103 380.9 310 66.8
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 3.6e-94 350.5 1122 26.6
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.0e-93 347.4 266 62.8
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 1.9e-92 344.7 202 78.7
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 4.3e-92 343.6 301 55.1
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 9.1e-90 335.9 192 81.8
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 1.5e-89 335.1 784 31.9
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.5e-89 335.1 195 76.9
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 3.0e-85 320.9 239 68.6
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.1e-71 275.8 567 34.9
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 1.2e-52 212.6 194 53.6
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 5.9e-49 200.3 578 29.1
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 5.9e-49 200.3 578 29.1
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 9.5e-47 193.0 163 58.3
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.6e-41 175.6 126 68.3
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 3.5e-41 174.5 99 81.8
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.3e-39 167.5 101 75.2
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 6.0e-33 147.1 78 85.9
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 1.5e-28 132.5 96 64.6
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 4.4e-28 131.0 72 81.9
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.4e-26 125.9 70 82.9
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.2e-25 122.9 69 82.6
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 2.1e-25 122.1 186 41.4
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 1.4e-21 109.4 147 42.9
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.4e-20 104.8 62 64.5
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 5.8e-20 104.0 113 52.2
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.2e-19 102.1 53 79.2
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.8e-19 101.3 64 70.3
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 6.4e-19 100.5 122 44.3
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 3.5e-17 94.7 112 48.2
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 7.8e-17 93.6 100 49.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.8e-13 82.4 59 54.2
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 4.0e-13 81.3 105 41.0
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 5.4e-10 70.9 367 20.7
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 5.4e-10 70.9 367 20.7
Ah.08g218380 Amaranthus hybridus HOM05D000464 ORTHO05D006292 3.5e-09 68.2 375 19.5
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 1.0e-08 66.6 86 45.3
ClCG06G017570 Citrullus lanatus HOM05D000464 ORTHO05D006292 3.9e-08 64.7 370 20.5
CDE06G2114 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 4.3e-07 61.2 326 20.9
Rhsim12G0170400 Rhododendron simsii HOM05D000464 ORTHO05D006292 5.6e-07 60.8 170 30.0
vmacro16690 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 7.3e-07 60.5 170 28.8
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 1.3e-06 59.7 141 31.9
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.3e-06 59.7 293 22.2
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.3e-06 59.7 293 22.2
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 2.1e-06 58.9 127 30.7
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 2.8e-06 58.5 170 22.9
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 3.6e-06 58.2 145 27.6
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 3.6e-06 58.2 143 29.4
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 4.8e-06 57.8 299 24.1
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 8.1e-06 57.0 128 29.7
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 8.1e-06 57.0 31 87.1


User provided reference genes

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