Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 0.0e+00 1815.8 984 100.0
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 1.8e-169 600.9 857 48.8
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 8.5e-164 582.0 786 51.3
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 3.1e-158 563.5 764 50.5
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 4.7e-154 549.7 804 49.8
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 2.2e-151 540.8 762 49.9
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.6e-149 533.9 773 49.0
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 4.5e-149 533.1 771 49.2
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 5.9e-149 532.7 771 49.2
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 8.5e-148 528.9 826 46.5
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.5e-147 527.3 767 48.5
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 4.2e-147 526.6 812 46.3
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 7.2e-147 525.8 784 46.2
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.4e-145 521.5 834 46.2
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 4.1e-142 510.0 791 47.0
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 9.1e-142 508.8 825 44.8
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 3.5e-141 506.9 840 44.4
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 3.5e-141 506.9 695 48.5
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 9.8e-136 488.8 830 43.5
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.3e-135 488.4 867 42.9
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 2.2e-135 487.6 765 46.4
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 4.5e-133 479.9 704 47.4
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 1.1e-131 475.3 831 44.8
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 3.4e-128 463.8 673 45.6
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 4.4e-128 463.4 717 44.9
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 4.9e-127 459.9 797 43.9
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.1e-126 458.8 708 43.1
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.8e-126 458.0 723 42.6
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 4.1e-126 456.8 856 40.9
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 7.0e-126 456.1 743 43.5
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.6e-125 454.9 750 45.3
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.6e-125 454.9 858 41.8
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 5.9e-125 453.0 793 43.5
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 3.8e-124 450.3 841 40.5
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 3.8e-124 450.3 798 44.2
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 2.1e-122 444.5 796 44.5
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 2.8e-122 444.1 657 49.2
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 3.6e-122 443.7 790 43.7
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 3.6e-122 443.7 702 43.2
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 8.0e-122 442.6 731 42.3
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 1.8e-121 441.4 878 40.9
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 4.0e-121 440.3 725 45.5
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 1.3e-119 435.3 737 44.5
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 3.7e-119 433.7 833 41.9
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 4.9e-119 433.3 841 41.1
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.4e-118 431.8 794 41.4
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 3.2e-118 430.6 850 39.3
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.0e-116 425.6 843 41.4
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 6.6e-116 422.9 744 44.4
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 5.6e-115 419.9 797 39.3
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 9.5e-115 419.1 846 41.5
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.1e-114 417.9 821 40.0
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.1e-113 415.6 745 41.2
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.1e-113 414.1 719 43.4
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 4.0e-113 413.7 807 38.3
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 5.2e-113 413.3 816 39.8
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.2e-112 412.1 813 39.6
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 3.7e-111 407.1 794 40.6
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 1.9e-110 404.8 790 38.0
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.2e-110 404.1 866 38.7
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 3.2e-110 404.1 802 41.0
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 5.4e-110 403.3 717 40.7
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 3.5e-109 400.6 827 40.7
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.6e-106 391.7 834 36.7
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 2.1e-106 391.3 763 39.7
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 3.1e-105 387.5 795 38.9
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.7e-103 381.7 762 39.0
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 1.9e-102 378.3 721 40.5
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.1e-99 369.0 759 37.2
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 1.9e-99 368.2 853 37.5
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.9e-99 368.2 824 39.4
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 2.5e-99 367.9 821 36.8
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 5.6e-99 366.7 701 37.8
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 2.8e-98 364.4 722 39.2
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 2.8e-98 364.4 699 38.5
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.1e-97 362.5 712 38.2
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 1.1e-97 362.5 722 39.1
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 1.1e-97 362.5 723 38.6
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.1e-97 362.5 941 34.2
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 3.1e-97 360.9 763 37.7
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 1.2e-96 359.0 712 38.2
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.4e-94 352.1 711 37.8
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.4e-94 352.1 634 44.5
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.1e-94 350.5 609 40.2
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 4.3e-91 340.5 691 36.9
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 2.1e-90 338.2 725 38.1
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 2.8e-90 337.8 778 38.4
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 4.7e-90 337.0 702 37.0
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 1.4e-89 335.5 867 35.9
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 2.4e-89 334.7 781 36.5
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 5.2e-89 333.6 704 40.3
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 8.4e-87 326.2 700 35.9
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 2.1e-85 321.6 909 31.4
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 6.0e-85 320.1 778 34.1
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 8.7e-84 316.2 804 34.3
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 9.0e-81 306.2 871 33.0
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 2.9e-79 301.2 851 33.5
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 2.9e-79 301.2 777 33.7
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 4.9e-79 300.4 758 34.4
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 3.2e-78 297.7 747 34.4
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 2.7e-77 294.7 882 34.6
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.1e-74 285.0 694 33.1
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.4e-73 282.3 304 53.9
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 5.3e-73 280.4 681 35.1
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.2e-72 279.3 906 29.1
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.5e-72 278.9 693 35.4
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 7.6e-72 276.6 900 29.1
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 5.5e-70 270.4 260 58.5
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 5.5e-70 270.4 800 31.4
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 4.3e-67 260.8 804 32.7
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.3e-63 249.2 941 30.3
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.3e-58 232.6 618 33.2
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 2.8e-58 231.5 784 33.5
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 8.2e-58 229.9 454 41.4
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.4e-57 229.2 282 48.9
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 2.0e-56 225.3 748 28.6
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 2.7e-53 214.9 393 48.1
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.5e-51 209.1 769 26.9
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.3e-51 208.0 797 30.2
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.1e-49 203.0 267 44.9
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.7e-42 179.1 182 53.3
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.2e-40 172.9 773 27.6
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 2.9e-39 168.3 310 37.1
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 2.6e-35 155.2 145 57.9
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 4.1e-33 147.9 152 53.3
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 9.4e-30 136.7 368 35.9
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 9.4e-30 136.7 801 27.0
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.4e-28 132.9 176 48.9
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 9.7e-27 126.7 509 28.3
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 2.8e-26 125.2 291 34.7
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 7.7e-24 117.1 280 31.4
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.0e-23 116.7 178 41.6
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 6.5e-23 114.0 490 29.2
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 4.1e-17 94.7 225 32.9
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 5.4e-17 94.4 196 34.7
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 8.6e-15 87.0 168 33.9
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 5.5e-14 84.3 76 63.2
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 2.5e-06 58.9 66 51.5
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 7.3e-06 57.4 61 49.2


User provided reference genes

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