Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 2191.4 1115 100.0
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1681.8 1116 76.3
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1609.7 1117 72.5
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1604.7 1117 72.2
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1593.6 1123 72.2
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1582.0 1129 71.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1571.2 1129 70.9
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1565.8 1118 70.8
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1548.1 1117 71.1
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1534.2 1117 70.3
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1534.2 1123 68.9
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1532.7 1120 69.1
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1532.3 1118 69.7
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1531.5 1184 67.1
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1513.8 1124 69.1
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1499.2 1118 68.6
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1487.6 1118 68.1
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1486.1 1115 69.1
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1481.1 1115 68.9
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1469.9 1119 67.0
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1469.5 1117 67.0
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1466.4 1118 67.3
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1462.2 1128 66.8
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1457.2 1068 70.3
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1456.4 1119 66.0
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1454.1 1118 66.4
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1450.3 1150 64.5
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1444.9 1113 66.7
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1443.3 1118 66.4
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1442.2 1117 65.6
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1440.2 1184 63.4
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1433.7 1157 65.1
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1432.2 1146 64.3
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1431.8 1118 65.1
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1431.0 1116 66.3
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1429.8 1120 65.0
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1425.2 1117 65.4
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1421.8 1119 66.0
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1421.8 1118 65.1
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1421.0 1125 64.9
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1417.1 1118 65.1
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1414.4 1126 64.8
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1412.5 1135 65.7
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1412.1 1117 64.9
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1409.8 1119 64.9
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1407.9 1119 64.8
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1406.0 1121 63.5
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1402.9 1117 64.7
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1400.6 1116 63.9
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1396.3 1117 63.6
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1395.6 1121 63.2
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1394.0 1118 64.0
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1392.9 1122 64.3
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1392.1 1111 64.0
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1392.1 1111 64.0
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1387.9 1117 63.0
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1383.6 1115 63.7
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1374.8 1110 64.1
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1374.4 1134 63.3
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1372.8 1124 64.1
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1372.8 1124 64.1
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1372.8 1115 63.9
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1372.1 934 73.9
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1370.5 1116 64.1
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1370.1 1120 63.6
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1369.4 1116 62.5
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1368.6 1119 64.1
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1365.9 1125 63.6
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1364.0 954 71.9
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1360.5 1116 64.2
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1360.1 1114 64.0
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1359.7 1173 62.7
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1359.4 1120 62.9
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1355.9 1114 63.6
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1350.9 1114 63.0
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1349.7 1137 62.0
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1347.4 1117 62.8
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1344.3 1118 62.4
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1337.0 1126 63.5
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1333.2 1111 62.9
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1331.2 1112 63.4
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1324.3 1117 62.8
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1322.4 1138 61.9
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1317.8 1202 58.2
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1314.7 1121 61.6
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1310.0 1119 62.1
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1309.7 1120 62.1
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1305.8 957 70.0
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1305.4 1180 57.5
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1302.0 1006 68.2
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1302.0 1186 58.7
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1300.8 1117 59.6
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1299.6 1114 60.9
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1294.3 1127 60.7
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1276.5 1099 60.6
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1264.6 1020 64.2
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1261.9 1011 63.9
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1245.0 953 68.2
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1240.7 1101 58.0
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1240.3 959 66.7
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1203.0 1161 56.6
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1192.6 1124 56.1
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1185.6 842 70.5
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1177.2 794 73.4
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 1132.9 1103 54.3
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1120.5 904 64.0
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 0.0e+00 1075.5 1153 51.3
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.1e-308 1063.5 757 69.0
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 1.9e-292 1009.6 798 64.9
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 3.2e-284 982.2 1035 51.4
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 3.8e-277 958.7 648 72.7
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.6e-272 943.3 1134 47.0
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 7.1e-268 927.9 1012 50.7
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.2e-259 900.6 1150 45.2
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 9.7e-249 864.4 1105 44.2
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 1.0e-242 844.3 823 54.2
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.6e-209 733.4 980 44.2
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 4.9e-176 622.9 1118 38.1
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 3.6e-163 580.1 423 70.0
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 2.1e-158 564.3 459 61.7
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 2.1e-155 554.3 1139 35.9
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.5e-148 531.6 538 54.8
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.6e-121 441.8 331 64.0
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 3.8e-104 384.0 299 65.2
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 3.7e-99 367.5 1159 27.0
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.9e-87 328.6 539 40.1
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.6e-80 303.5 233 68.2
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.7e-73 281.6 385 44.4
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.4e-66 259.2 261 52.5
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.4e-66 257.3 378 41.3
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.7e-64 252.3 230 60.4
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.0e-64 251.5 258 52.7
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.7e-57 228.4 215 54.9
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 8.7e-56 223.4 229 52.4
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 6.9e-53 213.8 210 56.7
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 1.9e-47 195.7 407 33.7
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.8e-46 191.8 223 47.1
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.8e-46 191.8 223 47.1
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.8e-46 191.8 223 47.1
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.4e-45 188.7 223 46.6
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.2e-44 186.4 243 44.0
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.2e-44 186.4 223 46.2
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 5.1e-40 171.0 143 62.2
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 1.9e-39 169.1 245 44.5
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 2.5e-39 168.7 245 44.5
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 3.7e-38 164.9 245 43.7
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.0e-37 161.4 223 43.0
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 5.9e-28 131.0 356 29.2
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 4.3e-23 114.8 97 61.9
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.8e-22 112.1 241 35.7
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 3.7e-22 111.7 110 55.5
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.9e-21 107.5 81 64.2
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 5.9e-20 104.4 129 51.2
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 2.1e-17 95.9 315 26.3
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.4e-15 88.2 73 58.9
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 5.7e-15 87.8 55 72.7
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 2.8e-14 85.5 58 62.1


User provided reference genes

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