Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 2387.5 1167 100.0
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2124.4 1159 88.7
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2031.5 1159 83.8
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2026.9 1161 83.8
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2013.4 1159 82.9
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2002.3 1160 82.4
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 1998.0 1159 81.7
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1995.3 1159 82.1
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1993.4 1159 82.5
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1993.4 1159 82.4
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1979.5 1161 81.9
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1979.5 1159 81.4
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1975.3 1159 81.4
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1974.1 1157 81.5
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 1971.8 1158 81.1
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 1969.1 1160 81.5
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 1966.0 1160 81.6
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1962.6 1166 81.5
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 1961.8 1159 80.3
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1960.7 1160 81.5
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1960.7 1160 81.6
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1958.3 1160 81.7
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 1957.2 1157 80.6
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1954.1 1159 80.7
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1935.2 1157 80.0
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1927.5 1159 79.1
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1920.6 1157 79.4
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1919.8 1157 79.3
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 1919.1 1178 78.4
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 1915.2 1160 78.5
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1910.6 1157 79.3
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 1904.8 1159 78.0
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 1896.7 1160 77.2
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 1890.2 1159 78.3
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 1877.8 1159 77.7
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 1875.9 1163 76.3
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 1871.7 1157 77.8
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 1862.8 1160 76.7
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 1862.4 1159 77.1
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 1857.0 1219 75.0
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 1854.0 1159 76.9
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1850.1 1160 76.4
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1848.6 1160 77.2
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 1846.2 1160 76.3
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1845.5 1159 76.7
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 1842.0 1159 73.4
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 1842.0 1159 73.4
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1835.8 1159 76.2
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1835.8 1047 84.4
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 1834.3 1207 72.9
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 1833.2 1161 75.3
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 1828.9 1159 74.7
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 1827.4 1160 75.2
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1823.5 1163 75.1
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 1821.2 1160 75.1
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 1819.7 1159 74.9
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1818.9 1157 74.5
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1818.5 1144 73.9
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1817.4 1160 74.7
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 1814.7 1160 74.4
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1812.3 1161 74.2
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1811.2 1162 74.5
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 1810.0 1160 74.7
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 1807.0 1160 74.1
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1807.0 1161 74.2
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 1797.3 1150 74.0
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 1795.8 1170 73.3
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 1795.8 1161 74.7
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 1795.4 1167 73.6
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 1792.3 1161 73.6
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1789.6 1242 71.4
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 1788.5 1147 74.4
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1782.7 1159 72.9
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1777.7 1285 69.4
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1774.2 1163 73.2
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 1771.5 1161 73.1
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1761.1 1163 72.7
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1758.8 1146 74.7
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1739.5 1579 57.5
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1737.6 1159 70.8
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 1721.4 1159 71.0
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1717.6 1178 68.9
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1714.1 1104 73.5
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1697.2 1161 73.3
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1680.6 1183 68.3
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1665.2 1045 77.4
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1649.8 1098 71.7
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1637.9 1172 66.6
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1590.9 1181 66.8
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1579.7 1159 65.0
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1561.6 936 80.0
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1507.3 1084 66.1
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1461.4 1125 63.9
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1435.2 1158 59.2
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1428.3 1158 58.9
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1405.2 1179 58.4
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1390.9 1241 58.8
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1386.3 1159 57.2
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1353.2 1179 57.1
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1308.5 889 70.2
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1257.7 1164 59.1
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1208.7 910 65.8
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.0e-301 1040.4 616 80.5
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 2.5e-300 1035.8 742 67.4
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 8.8e-293 1010.7 828 58.9
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.5e-279 966.1 579 80.0
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 5.3e-274 948.3 682 65.0
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 6.1e-270 934.9 601 74.4
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 1.4e-266 923.7 613 72.4
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 9.1e-266 921.0 573 77.7
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.9e-263 913.3 552 80.8
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 9.6e-215 751.5 637 57.5
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 2.6e-204 716.8 430 79.3
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.0e-179 635.2 374 80.7
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 3.0e-160 570.5 376 73.9
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 2.8e-158 563.9 329 83.6
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 1.4e-152 545.0 560 46.8
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.7e-126 458.4 890 34.2
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.4e-125 454.5 698 40.7
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.2e-121 442.2 312 68.9
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.3e-112 411.4 246 76.4
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 7.6e-111 406.4 241 82.6
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 2.9e-110 404.4 336 65.5
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.3e-107 395.6 429 45.2
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.9e-82 312.0 190 82.6
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.1e-77 296.2 176 75.6
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 8.5e-70 270.0 176 67.6
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 1.9e-61 242.3 153 73.9
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.5e-61 241.9 136 79.4
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 8.8e-51 206.8 209 46.9
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 3.5e-47 194.9 115 81.7
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 3.3e-42 178.3 98 89.8
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 6.3e-41 174.1 130 62.3
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.1e-37 163.3 169 53.3
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 1.6e-36 159.5 206 48.5
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 3.7e-33 148.3 123 57.7
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 4.0e-27 128.3 106 60.4
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 7.5e-26 124.0 89 67.4
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 7.5e-26 124.0 93 67.7
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 9.8e-26 123.6 83 68.7
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 1.1e-24 120.2 73 80.8
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 1.6e-23 116.3 215 38.1
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 7.3e-21 107.5 75 76.0
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 4.0e-19 101.7 98 51.0
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 1.5e-18 99.8 84 58.3
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 6.4e-17 94.4 57 82.5
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 4.1e-16 91.7 58 69.0
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 2.7e-15 89.0 94 53.2
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.9e-13 82.8 51 72.5
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 5.6e-13 81.3 50 80.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.6e-12 78.6 52 73.1
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.1e-11 77.0 112 38.4
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 1.4e-11 76.6 39 87.2
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 6.8e-11 74.3 43 72.1
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 6.8e-11 74.3 38 84.2
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 3.4e-10 72.0 41 75.6
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 5.8e-10 71.2 165 32.1
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.7e-09 69.7 72 50.0
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 3.7e-09 68.6 57 56.1
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 3.2e-08 65.5 35 82.9
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 7.8e-07 60.8 42 78.6
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 7.8e-07 60.8 40 67.5
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 3.0e-06 58.9 162 30.9


User provided reference genes

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