Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 0.0e+00 2574.3 1372 100.0
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 0.0e+00 1273.5 1435 53.7
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 8.8e-260 901.4 1416 43.7
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 1.6e-256 890.6 1415 44.2
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 2.5e-246 856.7 1411 41.7
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 1.8e-228 797.3 1470 40.0
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 3.2e-217 760.0 1452 39.1
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 6.0e-216 755.7 1436 39.9
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 6.6e-215 752.3 1424 39.6
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 2.6e-211 740.3 1422 40.3
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 5.1e-207 726.1 1448 38.7
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 2.9e-202 710.3 1490 37.1
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 1.6e-197 694.5 1421 37.5
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 1.0e-191 675.2 1402 37.2
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 7.6e-187 659.1 1407 35.4
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 2.2e-186 657.5 1393 36.2
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 5.3e-180 636.3 1417 36.5
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.1e-174 618.6 1418 36.0
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.5e-166 591.7 1261 38.1
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 5.3e-164 583.2 1404 34.0
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 9.0e-164 582.4 1276 35.1
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 7.7e-163 579.3 1409 34.4
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 1.0e-162 578.9 1425 33.8
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 1.2e-160 572.0 1422 34.0
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 5.1e-159 566.6 1414 33.7
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 6.3e-157 559.7 1399 34.2
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.1e-156 558.9 1404 34.0
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 2.4e-156 557.8 1455 33.1
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 7.7e-155 552.7 1400 34.1
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 4.2e-153 547.0 1401 33.8
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.4e-148 531.2 1212 36.7
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 2.6e-147 527.7 1275 34.0
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 6.5e-146 523.1 1431 32.8
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 1.1e-145 522.3 1439 33.2
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 2.1e-144 518.1 1400 32.6
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 6.7e-143 513.1 916 38.2
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.5e-142 511.9 1411 33.2
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 7.5e-142 509.6 1409 31.9
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 2.3e-135 488.0 1518 31.0
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.6e-134 484.6 941 38.8
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.7e-133 481.9 955 38.0
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 1.3e-130 472.2 1392 32.4
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 1.3e-125 455.7 1388 31.7
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 2.2e-125 454.9 1399 30.4
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 2.2e-125 454.9 1463 30.4
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 1.4e-124 452.2 1395 30.3
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 5.4e-124 450.3 1392 30.6
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 9.2e-124 449.5 1457 29.9
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 1.5e-121 442.2 1421 29.8
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 9.5e-121 439.5 1444 31.9
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 9.8e-118 429.5 1399 29.8
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 4.9e-117 427.2 1410 30.3
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 4.9e-117 427.2 1400 31.4
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 6.4e-117 426.8 1432 30.0
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 4.1e-116 424.1 1392 29.6
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 4.1e-116 424.1 1392 29.6
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 1.6e-115 422.2 1393 30.5
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 5.0e-114 417.2 936 37.0
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 1.1e-113 416.0 1488 30.2
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 9.5e-113 412.9 1440 29.9
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 8.0e-112 409.8 1400 28.9
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 8.0e-112 409.8 1400 28.9
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 8.9e-111 406.4 1403 30.1
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 1.3e-109 402.5 1394 28.9
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 3.7e-109 401.0 1410 28.4
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 6.4e-109 400.2 1409 32.6
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 1.6e-107 395.6 1401 28.7
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 2.0e-107 395.2 1407 31.8
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 2.0e-107 395.2 1413 28.9
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 7.3e-105 386.7 1402 29.0
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 1.1e-100 372.9 1412 28.6
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.4e-100 372.5 898 34.6
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 4.1e-100 370.9 1402 28.6
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 8.6e-98 363.2 1552 28.2
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 1.9e-97 362.1 1428 28.9
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 5.6e-97 360.5 1489 29.9
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.7e-93 349.0 1421 27.6
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 1.4e-92 345.9 1414 28.8
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.0e-90 339.7 1255 27.6
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 6.6e-90 337.0 538 41.4
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 1.5e-89 335.9 1378 28.3
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 1.6e-88 332.4 1431 28.4
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 5.1e-82 310.8 1452 25.8
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 8.7e-82 310.1 1410 27.0
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 1.1e-81 309.7 1444 25.3
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 1.5e-81 309.3 1423 26.5
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 6.0e-75 287.3 1380 26.5
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 7.9e-75 287.0 1450 25.7
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 8.7e-74 283.5 414 41.8
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 1.1e-73 283.1 1388 26.7
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 2.4e-71 275.4 1397 26.5
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 4.5e-70 271.2 284 52.1
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 5.8e-70 270.8 1367 25.7
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 6.4e-69 267.3 403 42.2
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 5.1e-66 257.7 467 36.0
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 1.6e-64 252.7 1539 25.4
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 6.9e-63 247.3 391 40.7
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 4.5e-62 244.6 460 37.8
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.1e-57 229.9 566 31.8
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.2e-54 219.9 280 47.1
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 2.0e-54 219.2 1442 23.4
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 1.0e-53 216.9 471 33.3
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 2.2e-53 215.7 589 30.9
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 2.7e-51 208.8 259 49.8
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 8.7e-50 203.8 296 41.2
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 2.5e-49 202.2 358 39.1
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 1.6e-48 199.5 1399 24.8
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.0e-45 190.3 364 40.4
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 2.5e-44 185.7 1370 22.8
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 2.8e-40 172.2 146 58.9
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 3.7e-40 171.8 350 37.7
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 8.2e-40 170.6 146 61.0
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.4e-39 169.1 207 44.4
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 5.3e-39 167.9 1413 23.0
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 9.4e-36 157.1 248 41.9
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 5.9e-30 137.9 382 29.1
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 2.3e-26 125.9 134 58.2
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 2.3e-26 125.9 134 58.2
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 2.3e-26 125.9 150 42.0
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 1.5e-25 123.2 307 34.2
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 1.4e-23 116.7 331 33.8
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.2e-20 105.5 126 55.6
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.3e-18 99.4 126 52.4
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 5.9e-14 84.7 172 39.0
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 1.5e-12 80.1 270 31.5
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 9.5e-12 77.4 80 50.0
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 1.2e-11 77.0 92 50.0
Actinidia12354 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.1e-11 76.3 101 45.5
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 2.1e-11 76.3 167 32.9
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 3.6e-11 75.5 71 56.3
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 3.0e-10 72.4 70 52.9
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 2.6e-09 69.3 125 37.6
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 4.4e-09 68.6 618 24.4
Glyma.07G011650 Glycine max HOM05D005171 ORTHO05D006343 1.7e-08 66.6 88 37.5
MD09G1132300 Malus domestica HOM05D005171 ORTHO05D006343 8.3e-08 64.3 164 32.9
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 2.4e-07 62.8 63 49.2


User provided reference genes

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