Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2733.4 1386 100.0
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2492.6 1387 90.3
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2448.3 1388 88.7
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2436.0 1389 87.8
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2429.1 1388 88.5
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2427.9 1389 87.5
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2413.3 1390 87.3
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2410.2 1390 87.1
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2401.3 1390 87.1
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2399.8 1388 86.5
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2394.0 1399 85.6
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2384.4 1388 86.0
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2384.4 1388 86.0
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2377.1 1387 85.8
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2375.1 1386 85.3
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2372.0 1386 85.1
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2371.7 1388 85.5
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2371.3 1388 85.4
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2364.3 1393 85.4
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2357.8 1389 85.0
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2356.3 1388 85.4
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2353.9 1387 85.1
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2343.2 1388 84.6
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2340.5 1387 84.2
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2339.3 1346 87.4
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2325.4 1388 84.4
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2319.7 1390 83.4
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2314.3 1387 83.4
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2308.5 1390 84.1
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2306.9 1387 83.6
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2306.6 1390 83.2
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2303.5 1432 81.9
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2297.3 1391 83.1
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2295.0 1389 82.7
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2294.2 1389 82.7
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2292.7 1387 82.1
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2285.8 1387 82.0
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2285.4 1388 82.1
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2279.6 1389 82.3
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2271.9 1481 78.5
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2271.9 1391 82.0
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2268.4 1406 82.2
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2266.5 1402 82.2
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2266.1 1387 81.8
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2264.2 1391 81.6
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2262.6 1389 82.4
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2262.3 1403 81.9
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2261.9 1388 80.5
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2260.7 1388 80.4
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2257.6 1402 81.6
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2256.1 1416 80.2
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2250.7 1401 81.7
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2249.2 1402 81.6
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2245.3 1402 81.5
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2245.3 1402 81.3
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2244.9 1395 80.7
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2243.8 1402 81.4
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2242.2 1387 80.2
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2241.8 1424 80.3
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2239.9 1388 81.6
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2234.9 1392 80.9
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2231.8 1387 80.7
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2231.4 1386 80.7
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2231.4 1399 79.4
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2225.3 1412 80.9
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2216.8 1387 80.7
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2216.4 1367 82.1
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2216.0 1400 78.4
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2213.7 1411 78.6
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2206.4 1484 76.5
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2192.2 1387 79.1
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2185.6 1253 87.9
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2173.7 1396 78.7
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2145.5 1389 78.1
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2124.4 1416 77.4
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2087.0 1223 84.7
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2081.2 1698 65.9
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 2017.3 1350 75.7
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 2014.6 1303 78.7
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2001.9 1354 75.0
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2000.3 1353 75.0
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1952.6 1400 72.2
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1927.1 1332 72.7
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1917.9 1374 72.7
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1911.7 1194 80.0
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1911.0 1370 70.1
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1860.9 1366 69.0
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1857.0 1362 68.9
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1786.9 1531 62.9
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1492.6 929 78.8
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1480.3 1156 65.0
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1454.5 821 88.4
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1406.3 1379 52.5
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1398.6 977 74.1
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1359.4 1374 51.7
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1349.0 1393 50.3
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1343.9 1342 51.1
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1258.4 715 88.8
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1244.6 815 77.8
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1199.9 761 78.7
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1189.5 880 66.5
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1174.1 791 75.6
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 1.1e-297 1027.3 588 87.8
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 1.7e-282 976.9 824 59.1
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.6e-262 908.7 601 77.5
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 8.7e-215 751.9 523 73.8
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 7.6e-211 738.8 484 78.3
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 6.9e-196 689.1 537 66.1
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 7.2e-185 652.5 1483 29.5
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.8e-164 584.7 532 61.3
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.8e-144 517.7 366 72.1
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.7e-141 508.4 535 52.1
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 2.7e-123 448.0 537 50.7
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 4.0e-103 380.9 275 68.7
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 5.3e-95 354.0 221 76.5
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.4e-87 329.3 222 73.9
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.1e-81 309.7 417 45.8
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 8.8e-74 283.5 298 55.0
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.9e-61 241.9 145 82.8
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 6.3e-56 224.2 154 74.0
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.9e-45 188.7 128 68.0
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 6.1e-43 181.0 133 72.9
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 3.5e-38 165.2 116 74.1
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 2.1e-35 156.0 89 79.8
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 5.8e-33 147.9 94 79.8
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 2.2e-32 146.0 84 86.9
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 4.9e-32 144.8 110 67.3
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.4e-32 144.4 145 50.3
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 1.7e-29 136.3 80 78.8
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 1.5e-28 133.3 101 63.4
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 7.3e-28 131.0 101 67.3
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 1.6e-27 129.8 86 76.7
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 8.9e-26 124.0 150 54.0
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 1.1e-23 117.1 239 37.2
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 1.4e-23 116.7 173 41.0
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 4.1e-23 115.2 98 57.1
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.1e-20 107.1 68 79.4
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 3.1e-18 99.0 89 53.9
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 3.4e-17 95.5 177 39.0
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.8e-17 94.7 51 90.2
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 4.9e-16 91.7 55 81.8
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.2e-15 89.0 50 90.0
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 1.6e-14 86.7 137 40.1
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 3.9e-13 82.0 99 47.5
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 3.3e-12 79.0 56 67.9
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 3.3e-12 79.0 56 67.9
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 7.3e-12 77.8 45 84.4
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 6.2e-11 74.7 42 88.1
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 2.9e-08 65.9 44 75.0
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 2.9e-08 65.9 44 75.0
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 2.9e-08 65.9 44 75.0
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 2.9e-08 65.9 44 75.0
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 2.9e-08 65.9 44 75.0
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 1.1e-07 63.9 54 57.4
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 4.2e-07 62.0 43 72.1


User provided reference genes

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