Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 5.6e-84 314.3 168 100.0
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 5.6e-84 314.3 168 100.0
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 1.0e-77 293.5 166 93.4
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 2.3e-77 292.4 165 93.3
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 5.1e-77 291.2 166 92.8
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 1.1e-76 290.0 166 91.0
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 1.1e-76 290.0 166 91.0
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-76 290.0 166 91.0
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-76 290.0 166 91.0
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-76 290.0 166 91.0
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 1.1e-76 290.0 166 91.0
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 1.1e-76 290.0 166 91.0
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-76 288.5 166 90.4
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 4.3e-76 288.1 165 91.5
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 4.3e-76 288.1 165 91.5
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 4.3e-76 288.1 165 91.5
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 4.3e-76 288.1 165 91.5
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 4.3e-76 288.1 165 91.5
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 4.3e-76 288.1 165 91.5
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 4.3e-76 288.1 165 91.5
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 5.6e-76 287.7 166 90.4
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 5.6e-76 287.7 166 90.4
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 9.6e-76 287.0 165 92.1
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 2.1e-75 285.8 165 90.3
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 2.1e-75 285.8 166 91.0
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 2.1e-75 285.8 166 91.0
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 8.1e-75 283.9 165 90.9
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 8.1e-75 283.9 165 90.9
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 1.1e-74 283.5 165 90.3
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 1.4e-74 283.1 166 89.8
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 1.2e-73 280.0 158 94.3
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 4.5e-73 278.1 166 88.6
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 4.5e-73 278.1 166 89.2
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 4.5e-73 278.1 166 89.2
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 4.5e-73 278.1 166 89.2
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 4.5e-73 278.1 166 89.2
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 4.5e-73 278.1 166 89.2
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 4.5e-73 278.1 166 89.2
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 4.5e-73 278.1 158 92.4
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 4.5e-73 278.1 158 92.4
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 4.5e-73 278.1 158 92.4
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 7.6e-73 277.3 158 92.4
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 7.6e-73 277.3 158 92.4
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 7.6e-73 277.3 158 92.4
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 7.6e-73 277.3 158 92.4
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.7e-72 276.2 169 87.6
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 2.2e-72 275.8 158 91.8
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 3.8e-72 275.0 158 92.4
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 3.8e-72 275.0 158 92.4
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.5e-72 274.2 165 80.0
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 6.5e-72 274.2 157 91.7
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 1.1e-71 273.5 164 87.2
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 1.1e-71 273.5 164 87.2
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.1e-71 273.5 166 78.3
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 1.6e-70 269.6 159 89.3
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 4.6e-70 268.1 169 85.8
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 5.1e-69 264.6 163 84.0
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 8.7e-69 263.8 158 88.6
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 1.1e-66 256.9 160 86.2
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 1.1e-66 256.9 160 86.2
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 9.0e-66 253.8 165 83.6
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.2e-63 245.0 165 83.0
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 7.2e-63 244.2 158 76.6
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 5.1e-61 238.0 157 83.4
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-60 236.9 165 72.1
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-58 230.3 140 88.6
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.4e-58 229.9 146 76.7
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 9.0e-58 227.3 140 87.9
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 9.0e-58 227.3 140 87.9
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 9.0e-58 227.3 140 87.9
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 2.6e-57 225.7 129 93.0
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 3.4e-57 225.3 133 81.2
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 2.1e-54 216.1 155 71.6
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 2.7e-54 215.7 131 79.4
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 4.6e-54 214.9 160 64.4
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.3e-53 212.6 139 87.1
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 3.9e-53 211.8 147 81.6
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 3.3e-52 208.8 125 89.6
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 4.3e-52 208.4 102 95.1
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 4.3e-52 208.4 102 95.1
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 3.7e-51 205.3 102 94.1
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 1.1e-50 203.8 102 93.1
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 5.3e-50 201.4 99 94.9
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 1.0e-48 197.2 113 93.8
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 1.3e-48 196.8 116 90.5
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.8e-48 195.3 97 93.8
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.4e-47 193.4 118 89.0
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.4e-47 193.4 118 89.0
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 1.9e-47 193.0 97 93.8
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 3.6e-46 188.7 139 69.1
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 5.1e-45 184.9 95 89.5
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 8.8e-45 184.1 92 92.4
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 2.0e-44 183.0 140 68.6
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-44 182.2 94 88.3
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 4.4e-44 181.8 94 88.3
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 4.4e-44 181.8 94 88.3
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 5.7e-44 181.4 162 61.1
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 7.4e-44 181.0 92 90.2
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 7.4e-44 181.0 92 90.2
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 2.2e-43 179.5 94 87.2
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.2e-43 179.5 99 84.8
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 2.8e-43 179.1 91 90.1
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.8e-43 179.1 91 90.1
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.8e-42 176.4 124 71.8
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.2e-40 169.5 95 84.2
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.5e-40 167.9 83 92.8
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 6.5e-40 167.9 100 92.0
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 4.2e-39 165.2 98 92.9
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 8.0e-38 161.0 140 61.4
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 2.3e-37 159.5 98 77.6
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 3.0e-37 159.1 95 77.9
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 4.0e-37 158.7 92 78.3
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 4.4e-36 155.2 92 78.3
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 7.5e-36 154.5 94 77.7
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 1.7e-35 153.3 91 82.4
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.2e-35 152.9 72 100.0
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 3.7e-35 152.1 163 49.7
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 8.2e-35 151.0 92 77.2
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 8.2e-35 151.0 92 77.2
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 8.2e-35 151.0 92 77.2
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 5.3e-34 148.3 83 83.1
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 2.7e-33 146.0 81 85.2
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 2.9e-32 142.5 76 89.5
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 5.0e-32 141.7 158 51.3
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 5.5e-31 138.3 92 71.7
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 8.0e-30 134.4 102 66.7
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 1.0e-29 134.0 69 92.8
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 8.8e-29 131.0 65 93.8
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 4.4e-28 128.6 115 60.0
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 4.1e-26 122.1 65 86.2
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 3.2e-23 112.5 76 69.7
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 2.1e-22 109.8 161 43.5
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 8.0e-22 107.8 76 72.4
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 1.5e-20 103.6 89 55.1
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 1.3e-19 100.5 54 87.0
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 3.7e-19 99.0 54 85.2
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 4.9e-19 98.6 53 86.8
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 2.4e-18 96.3 72 68.1
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 3.1e-18 95.9 53 84.9
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 3.1e-18 95.9 52 78.8
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 9.2e-18 94.4 76 61.8
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 9.2e-18 94.4 74 67.6
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.0e-17 93.2 106 46.2
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 8.6e-16 87.8 48 87.5
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 2.5e-15 86.3 45 86.7
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 5.6e-15 85.1 64 62.5
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 5.6e-15 85.1 47 83.0
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 3.6e-14 82.4 43 90.7
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.3e-13 79.7 40 90.0
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 6.8e-13 78.2 114 42.1
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 1.5e-12 77.0 38 89.5
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 2.6e-12 76.3 41 87.8
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 9.8e-12 74.3 55 63.6
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 1.1e-10 70.9 48 66.7
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 2.4e-10 69.7 62 56.5
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 2.7e-09 66.2 52 61.5
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 7.3e-07 58.2 37 75.7
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 6.2e-06 55.1 25 96.0
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 8.0e-06 54.7 129 34.1


User provided reference genes

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