Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013908m.g Citrus clementina HOM05D000595 ORTHO05D004141 8.2e-60 233.4 109 100.0
Ciclev10000152m.g Citrus clementina HOM05D000595 ORTHO05D004141 1.4e-43 179.5 89 92.1
TAR629G2634 Trochodendron aralioides HOM05D000595 ORTHO05D004141 3.5e-42 174.9 88 86.4
Actinidia32782 Actinidia chinensis HOM05D000595 ORTHO05D004141 2.2e-41 172.2 88 85.2
Atru.chr6.1509 Acer truncatum HOM05D000595 ORTHO05D004141 3.8e-41 171.4 88 86.4
Rhsim11G0034700 Rhododendron simsii HOM05D000595 ORTHO05D004141 3.8e-41 171.4 88 86.4
Ciclev10002552m.g Citrus clementina HOM05D000595 ORTHO05D004141 5.0e-41 171.0 90 88.9
Eucgr.E01209 Eucalyptus grandis HOM05D000595 ORTHO05D004141 8.5e-41 170.2 99 77.8
Eucgr.E01212 Eucalyptus grandis HOM05D000595 ORTHO05D004141 8.5e-41 170.2 99 77.8
TWI60G0525 Tripterygium wilfordii HOM05D000595 ORTHO05D004141 1.5e-40 169.5 88 85.2
vmacro00079 Vaccinium macrocarpon HOM05D000595 ORTHO05D004141 1.5e-40 169.5 88 84.1
Oeu042200.2 Olea europaea HOM05D000595 ORTHO05D004141 1.9e-40 169.1 88 85.2
GSVIVG01022815001 Vitis vinifera HOM05D000595 ORTHO05D004141 3.2e-40 168.3 88 83.0
DCAR_004519 Daucus carota HOM05D000595 ORTHO05D004141 5.5e-40 167.5 89 80.9
Prupe.5G018900 Prunus persica HOM05D000595 ORTHO05D004141 5.5e-40 167.5 88 84.1
PSO782G2105 Papaver somniferum HOM05D000595 ORTHO05D004141 9.4e-40 166.8 88 81.8
Thecc.10G189800 Theobroma cacao HOM05D000595 ORTHO05D004141 9.4e-40 166.8 88 83.0
Peaxi162Scf00053g00618 Petunia axillaris HOM05D000595 ORTHO05D004141 1.2e-39 166.4 88 84.1
Potri.001G129600 Populus trichocarpa HOM05D000595 ORTHO05D004141 1.2e-39 166.4 88 84.1
Dinv37419 Davidia involucrata HOM05D000595 ORTHO05D004141 1.6e-39 166.0 88 84.1
Glyma.04G123900 Glycine max HOM05D000595 ORTHO05D004141 1.6e-39 166.0 88 83.0
MD00G1148100 Malus domestica HOM05D000595 ORTHO05D004141 1.6e-39 166.0 88 83.0
Nn1g02038 Nelumbo nucifera HOM05D000595 ORTHO05D004141 1.6e-39 166.0 88 81.8
Sabra01G0099900 Salix brachista HOM05D000595 ORTHO05D004141 1.6e-39 166.0 88 84.1
Sed0017541 Sechium edule HOM05D000595 ORTHO05D004141 1.6e-39 166.0 88 81.8
CSS0032199 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 2.1e-39 165.6 88 84.1
Cfa012657 Carpinus fangiana HOM05D000595 ORTHO05D004141 2.7e-39 165.2 88 81.8
Haze_07995 Corylus avellana HOM05D000595 ORTHO05D004141 2.7e-39 165.2 88 81.8
SalBow4G2071 Salvia bowleyana HOM05D000595 ORTHO05D004141 2.7e-39 165.2 88 83.0
DCAR_004520 Daucus carota HOM05D000595 ORTHO05D004141 3.6e-39 164.9 89 79.8
Gohir.A02G091200 Gossypium hirsutum HOM05D000595 ORTHO05D004141 4.7e-39 164.5 88 84.1
Gohir.D02G109400 Gossypium hirsutum HOM05D000595 ORTHO05D004141 4.7e-39 164.5 88 84.1
Gorai.005G124100 Gossypium raimondii HOM05D000595 ORTHO05D004141 4.7e-39 164.5 88 84.1
SGA_v2.0_scaffold111G31354 Striga asiatica HOM05D000595 ORTHO05D004141 4.7e-39 164.5 88 84.1
PSO384G3949 Papaver somniferum HOM05D000595 ORTHO05D004141 8.0e-39 163.7 88 80.7
PGR042G2013 Punica granatum HOM05D000595 ORTHO05D004141 8.0e-39 163.7 88 83.0
Aqoxy3G02180 Aquilegia oxysepala HOM05D000595 ORTHO05D004141 1.0e-38 163.3 88 81.8
Medtr5g026610 Medicago truncatula HOM05D000595 ORTHO05D004141 1.4e-38 162.9 88 80.7
QL02p060306 Quercus lobata HOM05D000595 ORTHO05D004141 1.4e-38 162.9 88 80.7
TPR.G17247 Trifolium pratense HOM05D000595 ORTHO05D004141 1.4e-38 162.9 88 80.7
ClCG10G000900 Citrullus lanatus HOM05D000595 ORTHO05D004141 1.8e-38 162.5 88 83.0
Ca_25085_v3 Cicer arietinum L. HOM05D000595 ORTHO05D004141 3.0e-38 161.8 88 80.7
MBI04_g21145_MAGBIO Magnolia biondii HOM05D000595 ORTHO05D004141 3.0e-38 161.8 88 83.0
QL02p060347 Quercus lobata HOM05D000595 ORTHO05D004141 3.0e-38 161.8 88 79.5
Hund14328 Selenicereus undatus HOM05D000595 ORTHO05D004141 3.0e-38 161.8 88 81.8
Solyc08g075530.3 Solanum lycopersicum HOM05D000595 ORTHO05D004141 3.0e-38 161.8 88 81.8
Sopen08g024190 Solanum pennellii HOM05D000595 ORTHO05D004141 3.0e-38 161.8 88 81.8
HPP92_028113 Vanilla planifolia HOM05D000595 ORTHO05D004141 3.0e-38 161.8 90 78.9
Migut.E01361 Erythranthe guttata HOM05D000595 ORTHO05D004141 4.0e-38 161.4 88 80.7
Lj8A330G11 Lonicera japonica HOM05D000595 ORTHO05D004141 4.0e-38 161.4 88 81.8
RcHm_v2.0_Chr7g0213851 Rosa chinensis HOM05D000595 ORTHO05D004141 4.0e-38 161.4 88 83.0
Thecc.03G325300 Theobroma cacao HOM05D000595 ORTHO05D004141 4.0e-38 161.4 88 80.7
PSO384G3519 Papaver somniferum HOM05D000595 ORTHO05D004141 5.2e-38 161.0 90 77.8
VMungo1215G0102 Vigna mungo HOM05D000595 ORTHO05D004141 5.2e-38 161.0 88 79.5
Cpa.g.sc71.57 Carica papaya HOM05D000595 ORTHO05D004141 6.7e-38 160.6 88 81.8
THA.LOC104822230 Tarenaya hassleriana HOM05D000595 ORTHO05D004141 6.7e-38 160.6 88 79.5
AUR62007422 Chenopodium quinoa HOM05D000595 ORTHO05D004141 8.8e-38 160.2 88 78.4
MELO3C013786.2 Cucumis melo HOM05D000595 ORTHO05D004141 8.8e-38 160.2 88 80.7
CsaV3_3G000980 Cucumis sativus L. HOM05D000595 ORTHO05D004141 8.8e-38 160.2 88 80.7
Phvul.002G127000 Phaseolus vulgaris HOM05D000595 ORTHO05D004141 8.8e-38 160.2 88 79.5
HPP92_020874 Vanilla planifolia HOM05D000595 ORTHO05D004141 8.8e-38 160.2 90 77.8
Nitab4.5_0000985g0070 Nicotiana tabacum HOM05D000595 ORTHO05D004141 1.2e-37 159.8 88 80.7
Psat2g142760 Pisum sativum HOM05D000595 ORTHO05D004141 1.2e-37 159.8 88 79.5
FvH4_5g24150 Fragaria vesca HOM05D000595 ORTHO05D004141 1.5e-37 159.5 88 80.7
Lj2g0003822 Lotus japonicus HOM05D000595 ORTHO05D004141 1.5e-37 159.5 88 77.3
Lalb_Chr09g0325191 Lupinus albus HOM05D000595 ORTHO05D004141 1.5e-37 159.5 88 80.7
Nitab4.5_0000030g0360 Nicotiana tabacum HOM05D000595 ORTHO05D004141 1.5e-37 159.5 88 79.5
Sc07g0008260 Simmondsia chinensis HOM05D000595 ORTHO05D004141 1.5e-37 159.5 88 80.7
ECA246G1180 Erigeron canadensis HOM05D000595 ORTHO05D004141 2.0e-37 159.1 88 80.7
Manes.15G187301 Manihot esculenta HOM05D000595 ORTHO05D004141 2.0e-37 159.1 88 80.7
FAN13G2264 Fragaria x ananassa HOM05D000595 ORTHO05D004141 2.6e-37 158.7 88 81.8
MSTRG.24716 Avicennia marina HOM05D000595 ORTHO05D004141 3.3e-37 158.3 88 79.5
EL10Ac5g11905 Beta vulgaris HOM05D000595 ORTHO05D004141 3.3e-37 158.3 88 79.5
HanXRQChr17g0537211 Helianthus annuus HOM05D000595 ORTHO05D004141 3.3e-37 158.3 88 79.5
Duzib116G0855 Durio zibethinus HOM05D000595 ORTHO05D004141 4.4e-37 157.9 88 79.5
arahy.Tifrunner.gnm1.ann1.BJDV4A Arachis hypogaea HOM05D000595 ORTHO05D004141 5.7e-37 157.5 88 77.3
arahy.Tifrunner.gnm1.ann1.NQH3GN Arachis hypogaea HOM05D000595 ORTHO05D004141 5.7e-37 157.5 88 77.3
CiPaw.11G104000 Carya illinoinensis HOM05D000595 ORTHO05D004141 5.7e-37 157.5 88 79.5
Aa31LG10G5270 Aethionema arabicum HOM05D000595 ORTHO05D004141 7.5e-37 157.1 88 77.3
CAN.G1731.5 Capsicum annuum HOM05D000595 ORTHO05D004141 7.5e-37 157.1 88 79.5
CDE01G0028 Ceratophyllum demersum HOM05D000595 ORTHO05D004141 7.5e-37 157.1 88 76.1
Lsat_1_v5_gn_3_23561 Lactuca sativa HOM05D000595 ORTHO05D004141 9.7e-37 156.8 88 78.4
Psat2g142920 Pisum sativum HOM05D000595 ORTHO05D004141 1.3e-36 156.4 88 77.3
ATR0829G165 Amborella trichopoda HOM05D000595 ORTHO05D004141 1.7e-36 156.0 88 78.4
VMungo1215G1352 Vigna mungo HOM05D000595 ORTHO05D004141 1.7e-36 156.0 88 79.5
Cc00_g19580 Coffea canephora HOM05D000595 ORTHO05D004141 2.8e-36 155.2 88 77.3
Thhalv10019990m.g Eutrema salsugineum HOM05D000595 ORTHO05D004141 2.8e-36 155.2 88 77.3
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 3.7e-36 154.8 89 77.5
Sp3g21340 Schrenkiella parvula HOM05D000595 ORTHO05D004141 4.8e-36 154.5 88 77.3
TPR.G17274 Trifolium pratense HOM05D000595 ORTHO05D004141 6.3e-36 154.1 88 75.0
Carub.0003s2390 Capsella rubella HOM05D000595 ORTHO05D004141 8.2e-36 153.7 88 76.1
Duzib116G0431 Durio zibethinus HOM05D000595 ORTHO05D004141 8.2e-36 153.7 88 77.3
Migut.A00539 Erythranthe guttata HOM05D000595 ORTHO05D004141 8.2e-36 153.7 88 77.3
AT3G23640 Arabidopsis thaliana HOM05D000595 ORTHO05D004141 1.1e-35 153.3 88 76.1
SEGI_21462 Sequoiadendron giganteum HOM05D000595 ORTHO05D004141 1.1e-35 153.3 88 75.0
AL3G38380 Arabidopsis lyrata HOM05D000595 ORTHO05D004141 1.4e-35 152.9 88 76.1
AUR62027310 Chenopodium quinoa HOM05D000595 ORTHO05D004141 1.4e-35 152.9 98 71.4
Migut.E01363 Erythranthe guttata HOM05D000595 ORTHO05D004141 1.8e-35 152.5 88 78.4
Phvul.002G126900 Phaseolus vulgaris HOM05D000595 ORTHO05D004141 1.8e-35 152.5 88 77.3
GSVIVG01036945001 Vitis vinifera HOM05D000595 ORTHO05D004141 1.8e-35 152.5 88 75.0
C01p39990 Brassica napus HOM05D000595 ORTHO05D004141 9.1e-35 150.2 88 73.9
BraA01t03265Z Brassica rapa HOM05D000595 ORTHO05D004141 9.1e-35 150.2 88 73.9
Ciclev10011016m.g Citrus clementina HOM05D000595 ORTHO05D004141 9.1e-35 150.2 80 88.8
Oeu042228.5 Olea europaea HOM05D000595 ORTHO05D004141 9.1e-35 150.2 88 77.3
BcaB04g20429 Brassica carinata HOM05D000595 ORTHO05D004141 1.2e-34 149.8 89 76.4
C01p40000 Brassica napus HOM05D000595 ORTHO05D004141 1.6e-34 149.4 88 72.7
BolC1t03957H Brassica oleracea HOM05D000595 ORTHO05D004141 1.6e-34 149.4 88 72.7
Carub.0003s2391 Capsella rubella HOM05D000595 ORTHO05D004141 1.6e-34 149.4 88 73.9
Lalb_Chr16g0380651 Lupinus albus HOM05D000595 ORTHO05D004141 2.0e-34 149.1 88 75.0
ECA246G0927 Erigeron canadensis HOM05D000595 ORTHO05D004141 1.0e-33 146.7 86 76.7
CARHR099600 Cardamine hirsuta HOM05D000595 ORTHO05D004141 1.7e-33 146.0 88 72.7
A01p31410 Brassica napus HOM05D000595 ORTHO05D004141 2.2e-33 145.6 88 71.6
BraA01t03266Z Brassica rapa HOM05D000595 ORTHO05D004141 2.2e-33 145.6 88 71.6
A01p31400 Brassica napus HOM05D000595 ORTHO05D004141 5.0e-33 144.4 92 70.7
BcaB04g20431 Brassica carinata HOM05D000595 ORTHO05D004141 6.5e-33 144.1 91 68.1
TPR.G39643 Trifolium pratense HOM05D000595 ORTHO05D004141 1.5e-32 142.9 105 64.8
Manes.17G004600 Manihot esculenta HOM05D000595 ORTHO05D004141 2.5e-32 142.1 88 72.7
AagrBONN_evm.TU.Sc2ySwM_344.2687 Anthoceros agrestis HOM05D000595 ORTHO05D004141 5.5e-32 141.0 88 69.3
CSS0018432 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 7.2e-32 140.6 86 75.6
Oeu042203.1 Olea europaea HOM05D000595 ORTHO05D004141 1.2e-31 139.8 90 71.1
Os07g0420700 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D004141 1.6e-31 139.4 88 71.6
Zm00001eb305980 Zea mays HOM05D000595 ORTHO05D004141 2.1e-31 139.0 77 79.2
Zm00001eb096920 Zea mays HOM05D000595 ORTHO05D004141 3.6e-31 138.3 77 79.2
Pp3c4_24030 Physcomitrium patens HOM05D000595 ORTHO05D004141 6.1e-31 137.5 89 67.4
Mapoly0135s0001 Marchantia polymorpha HOM05D000595 ORTHO05D004141 1.8e-30 136.0 88 68.2
Cpa.g.c48289 Carica papaya HOM05D000595 ORTHO05D004141 2.3e-30 135.6 68 86.8
Os07g0421300 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D004141 5.2e-30 134.4 89 69.7
Pp3c13_11140 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.5e-29 132.9 88 64.8
FAN16G0455 Fragaria x ananassa HOM05D000595 ORTHO05D004141 5.7e-29 131.0 88 70.5
SMO116G0166 Selaginella moellendorffii HOM05D000595 ORTHO05D004141 7.5e-29 130.6 91 64.8
Pp3c5_4460 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.3e-28 129.8 88 63.6
Pp3c3_9200 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.7e-28 129.4 75 74.7
SGA_v2.0_scaffold89G27418 Striga asiatica HOM05D000595 ORTHO05D004141 6.3e-28 127.5 88 67.0
Cc08_g05430 Coffea canephora HOM05D000595 ORTHO05D004141 1.4e-27 126.3 88 68.2
Pp3c16_2470 Physcomitrium patens HOM05D000595 ORTHO05D004141 4.1e-27 124.8 88 62.5
Oeu042206.1 Olea europaea HOM05D000595 ORTHO05D004141 1.5e-24 116.3 90 62.2
Lsat_1_v5_gn_6_67241 Lactuca sativa HOM05D000595 ORTHO05D004141 5.5e-24 114.4 88 61.4
AagrBONN_evm.TU.Sc2ySwM_228.2586 Anthoceros agrestis HOM05D000595 ORTHO05D004141 4.7e-23 111.3 89 58.4
RcHm_v2.0_Chr7g0213741 Rosa chinensis HOM05D000595 ORTHO05D004141 4.7e-23 111.3 66 81.8
Pp3c19_14150 Physcomitrium patens HOM05D000595 ORTHO05D004141 5.7e-21 104.4 82 59.8
Oeu042195.1 Olea europaea HOM05D000595 ORTHO05D004141 1.9e-16 89.4 88 51.1
Oeu042194.1 Olea europaea HOM05D000595 ORTHO05D004141 7.3e-16 87.4 88 50.0


User provided reference genes

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