Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013778m.g Citrus clementina HOM05D002371 ORTHO05D002397 4.0e-31 137.5 72 100.0
Cpa.g.sc36.109 Carica papaya HOM05D002371 ORTHO05D002397 1.5e-17 92.4 62 79.0
Atru.chr13.31 Acer truncatum HOM05D002371 ORTHO05D002397 7.4e-17 90.1 61 77.0
Duzib114G0087 Durio zibethinus HOM05D002371 ORTHO05D002397 1.6e-16 89.0 61 75.4
CiPaw.07G131200 Carya illinoinensis HOM05D002371 ORTHO05D002397 2.8e-16 88.2 60 80.0
Dinv41635 Davidia involucrata HOM05D002371 ORTHO05D002397 2.8e-16 88.2 60 80.0
Thecc.10G149300 Theobroma cacao HOM05D002371 ORTHO05D002397 4.8e-16 87.4 61 75.4
COL.COLO4_20703 Corchorus olitorius HOM05D002371 ORTHO05D002397 6.3e-16 87.0 61 75.4
Manes.05G129800 Manihot esculenta HOM05D002371 ORTHO05D002397 2.4e-15 85.1 61 73.8
Sabra02G0001800 Salix brachista HOM05D002371 ORTHO05D002397 2.4e-15 85.1 61 73.8
GSVIVG01013447001 Vitis vinifera HOM05D002371 ORTHO05D002397 2.4e-15 85.1 61 72.1
Haze_22878 Corylus avellana HOM05D002371 ORTHO05D002397 3.1e-15 84.7 60 75.0
Thhalv10019316m.g Eutrema salsugineum HOM05D002371 ORTHO05D002397 3.1e-15 84.7 59 74.6
THA.LOC104813729 Tarenaya hassleriana HOM05D002371 ORTHO05D002397 3.1e-15 84.7 59 78.0
Nn5g31071 Nelumbo nucifera HOM05D002371 ORTHO05D002397 4.1e-15 84.3 60 73.3
CSS0044188 Camellia sinensis var. sinensis HOM05D002371 ORTHO05D002397 5.3e-15 84.0 59 76.3
ATR0605G369 Amborella trichopoda HOM05D002371 ORTHO05D002397 9.0e-15 83.2 60 73.3
Cfa014156 Carpinus fangiana HOM05D002371 ORTHO05D002397 9.0e-15 83.2 60 75.0
TWI56G0517 Tripterygium wilfordii HOM05D002371 ORTHO05D002397 9.0e-15 83.2 61 72.1
Gohir.A10G187400 Gossypium hirsutum HOM05D002371 ORTHO05D002397 1.2e-14 82.8 61 70.5
Gohir.D10G194300 Gossypium hirsutum HOM05D002371 ORTHO05D002397 1.2e-14 82.8 61 70.5
Gorai.011G217400 Gossypium raimondii HOM05D002371 ORTHO05D002397 1.2e-14 82.8 61 70.5
Potri.002G002700 Populus trichocarpa HOM05D002371 ORTHO05D002397 1.2e-14 82.8 60 73.3
vmacro04430 Vaccinium macrocarpon HOM05D002371 ORTHO05D002397 1.2e-14 82.8 59 76.3
Aa31LG4G6660 Aethionema arabicum HOM05D002371 ORTHO05D002397 1.5e-14 82.4 59 72.9
PGR083G1225 Punica granatum HOM05D002371 ORTHO05D002397 2.0e-14 82.0 58 75.9
CAN.G1330.26 Capsicum annuum HOM05D002371 ORTHO05D002397 3.4e-14 81.3 61 72.1
Migut.N02997 Erythranthe guttata HOM05D002371 ORTHO05D002397 3.4e-14 81.3 61 72.1
Lsat_1_v5_gn_4_95980 Lactuca sativa HOM05D002371 ORTHO05D002397 3.4e-14 81.3 61 70.5
MD06G1001800 Malus domestica HOM05D002371 ORTHO05D002397 4.5e-14 80.9 58 74.1
Prupe.5G002800 Prunus persica HOM05D002371 ORTHO05D002397 4.5e-14 80.9 58 74.1
TAR628G0414 Trochodendron aralioides HOM05D002371 ORTHO05D002397 4.5e-14 80.9 61 68.9
Cc10_g00150 Coffea canephora HOM05D002371 ORTHO05D002397 5.9e-14 80.5 60 73.3
FvH4_5g26470 Fragaria vesca HOM05D002371 ORTHO05D002397 5.9e-14 80.5 63 71.4
FAN08G1439 Fragaria x ananassa HOM05D002371 ORTHO05D002397 5.9e-14 80.5 63 71.4
FAN13G1670 Fragaria x ananassa HOM05D002371 ORTHO05D002397 5.9e-14 80.5 63 71.4
A07p42220 Brassica napus HOM05D002371 ORTHO05D002397 7.7e-14 80.1 59 71.2
HanXRQChr09g0276321 Helianthus annuus HOM05D002371 ORTHO05D002397 7.7e-14 80.1 61 70.5
Sopen04g036550 Solanum pennellii HOM05D002371 ORTHO05D002397 7.7e-14 80.1 61 72.1
PGSC0003DMG400009928 Solanum tuberosum HOM05D002371 ORTHO05D002397 7.7e-14 80.1 61 72.1
AL2G36700 Arabidopsis lyrata HOM05D002371 ORTHO05D002397 1.0e-13 79.7 59 69.5
Carub.0002s2347 Capsella rubella HOM05D002371 ORTHO05D002397 1.0e-13 79.7 59 69.5
Potri.005G258400 Populus trichocarpa HOM05D002371 ORTHO05D002397 1.3e-13 79.3 61 68.9
ECA238G0108 Erigeron canadensis HOM05D002371 ORTHO05D002397 1.7e-13 79.0 60 70.0
CARHR070110 Cardamine hirsuta HOM05D002371 ORTHO05D002397 2.2e-13 78.6 58 70.7
RcHm_v2.0_Chr7g0217381 Rosa chinensis HOM05D002371 ORTHO05D002397 2.2e-13 78.6 63 68.3
Aqoxy5G00951 Aquilegia oxysepala HOM05D002371 ORTHO05D002397 2.9e-13 78.2 61 67.2
AT1G76560 Arabidopsis thaliana HOM05D002371 ORTHO05D002397 3.8e-13 77.8 59 67.8
Lsat_1_v5_gn_2_126481 Lactuca sativa HOM05D002371 ORTHO05D002397 3.8e-13 77.8 62 69.4
C06p50830 Brassica napus HOM05D002371 ORTHO05D002397 5.0e-13 77.4 59 69.5
BolC6t40105H Brassica oleracea HOM05D002371 ORTHO05D002397 5.0e-13 77.4 59 69.5
BraA07t31751Z Brassica rapa HOM05D002371 ORTHO05D002397 5.0e-13 77.4 59 69.5
Sp5g31720 Schrenkiella parvula HOM05D002371 ORTHO05D002397 6.5e-13 77.0 59 69.5
MBI04_g18017_MAGBIO Magnolia biondii HOM05D002371 ORTHO05D002397 8.5e-13 76.6 60 68.3
DCAR_026374 Daucus carota HOM05D002371 ORTHO05D002397 1.4e-12 75.9 60 68.3
Gohir.A05G282500 Gossypium hirsutum HOM05D002371 ORTHO05D002397 1.4e-12 75.9 61 67.2
Gohir.D05G283700 Gossypium hirsutum HOM05D002371 ORTHO05D002397 1.4e-12 75.9 61 67.2
Gohir.D05G283850 Gossypium hirsutum HOM05D002371 ORTHO05D002397 1.4e-12 75.9 61 67.2
Gorai.009G298200 Gossypium raimondii HOM05D002371 ORTHO05D002397 1.4e-12 75.9 61 67.2
Nitab4.5_0009514g0050 Nicotiana tabacum HOM05D002371 ORTHO05D002397 2.5e-12 75.1 61 68.9
BcaC08g47231 Brassica carinata HOM05D002371 ORTHO05D002397 3.2e-12 74.7 59 67.8
MBI14_g09006_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D002397 7.2e-12 73.6 60 65.0
CDE05G2421 Ceratophyllum demersum HOM05D002371 ORTHO05D002397 2.1e-11 72.0 60 65.0
Sabra05G0200100 Salix brachista HOM05D002371 ORTHO05D002397 2.7e-11 71.6 60 65.0
ECA232G0578 Erigeron canadensis HOM05D002371 ORTHO05D002397 4.6e-11 70.9 57 68.4
SEGI_20456 Sequoiadendron giganteum HOM05D002371 ORTHO05D002397 7.9e-11 70.1 61 62.3
Rhsim07G0258100 Rhododendron simsii HOM05D002371 ORTHO05D002397 1.4e-10 69.3 53 75.5
SalBow6G1854 Salvia bowleyana HOM05D002371 ORTHO05D002397 1.4e-10 69.3 51 74.5
SGA_v2.0_scaffold227G43194 Striga asiatica HOM05D002371 ORTHO05D002397 3.0e-10 68.2 64 60.9
Actinidia33601 Actinidia chinensis HOM05D002371 ORTHO05D002397 3.9e-10 67.8 48 72.9
CANSAT25G2582 Cannabis sativa HOM05D002371 ORTHO05D002397 3.9e-10 67.8 61 65.6
QL02p016043 Quercus lobata HOM05D002371 ORTHO05D002397 1.5e-09 65.9 58 63.8
Peaxi162Scf00064g01413 Petunia axillaris HOM05D002371 ORTHO05D002397 2.5e-09 65.1 61 62.3
Solyc04g082910.1 Solanum lycopersicum HOM05D002371 ORTHO05D002397 2.5e-09 65.1 50 70.0
PSO017G5852 Papaver somniferum HOM05D002371 ORTHO05D002397 3.3e-09 64.7 61 55.7
PSO170G1655 Papaver somniferum HOM05D002371 ORTHO05D002397 3.3e-09 64.7 61 55.7
MBI04_g40156_MAGBIO Magnolia biondii HOM05D002371 ORTHO05D002397 4.3e-09 64.3 52 67.3
PSO017G1180 Papaver somniferum HOM05D002371 ORTHO05D002397 9.7e-09 63.2 61 54.1
BcaC08g47168 Brassica carinata HOM05D002371 ORTHO05D002397 4.8e-08 60.8 49 63.3
HanXRQChr07g0204821 Helianthus annuus HOM05D002371 ORTHO05D002397 4.8e-08 60.8 48 68.8
HPP92_018845 Vanilla planifolia HOM05D002371 ORTHO05D002397 1.5e-06 55.8 58 51.7
HPP92_018899 Vanilla planifolia HOM05D002371 ORTHO05D002397 1.5e-06 55.8 58 51.7


User provided reference genes

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