Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 4.4e-102 374.8 209 100.0
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.8e-72 275.8 215 78.1
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 6.1e-72 274.6 207 71.5
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.3e-71 272.7 208 76.0
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.3e-71 272.7 208 76.0
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 6.8e-71 271.2 211 76.8
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 8.9e-71 270.8 212 77.4
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-70 270.4 208 75.5
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.2e-70 270.4 211 76.3
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 4.4e-70 268.5 207 74.9
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 7.5e-70 267.7 206 69.4
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.7e-69 266.5 209 74.2
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.1e-68 263.8 208 66.3
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.1e-68 263.8 208 76.9
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.4e-68 262.7 206 74.8
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.4e-68 262.7 211 69.2
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.4e-68 262.7 211 69.2
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 4.1e-68 261.9 203 73.9
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.1e-68 261.9 203 73.9
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 4.1e-68 261.9 207 71.5
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 4.1e-68 261.9 210 67.1
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.7e-67 259.2 209 70.8
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 3.5e-67 258.8 204 68.1
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.5e-67 258.8 203 73.9
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 4.6e-67 258.5 207 72.5
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.0e-66 257.3 217 67.3
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.3e-66 256.9 204 76.5
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 6.6e-66 254.6 214 67.8
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.6e-66 254.6 215 67.4
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.5e-65 253.4 219 68.0
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 2.5e-65 252.7 214 72.9
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.3e-65 252.3 203 70.9
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 7.3e-65 251.1 213 72.3
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 9.5e-65 250.8 217 67.3
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 2.1e-64 249.6 220 70.0
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 2.8e-64 249.2 223 69.5
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.6e-64 248.8 207 69.1
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.7e-64 248.4 215 66.0
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 4.7e-64 248.4 202 72.3
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 6.2e-64 248.1 217 66.4
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.8e-63 246.5 210 68.6
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.3e-63 246.1 211 68.2
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.3e-63 246.1 212 66.0
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-62 243.4 190 70.5
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.6e-62 242.7 216 69.9
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 3.4e-62 242.3 215 65.1
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 4.4e-62 241.9 205 69.3
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 4.4e-62 241.9 212 65.6
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.8e-62 241.5 205 67.8
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.3e-61 240.4 207 60.9
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 4.9e-61 238.4 216 59.3
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 6.4e-61 238.0 208 65.9
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 6.4e-61 238.0 210 64.3
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 8.3e-61 237.7 207 71.0
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 8.3e-61 237.7 215 62.8
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.1e-60 237.3 215 67.0
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.1e-60 237.3 213 66.7
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.9e-60 236.5 207 59.4
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.9e-60 236.5 210 64.3
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.4e-60 236.1 219 68.5
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 4.1e-60 235.3 210 63.8
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 5.4e-60 235.0 209 58.4
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 7.0e-60 234.6 208 60.6
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 7.0e-60 234.6 207 60.9
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 9.2e-60 234.2 211 64.0
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.6e-59 233.4 209 67.5
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 2.7e-59 232.6 207 66.2
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 3.5e-59 232.3 206 64.1
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 3.5e-59 232.3 207 60.4
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 4.6e-59 231.9 210 59.5
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 6.0e-59 231.5 208 61.5
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 7.8e-59 231.1 207 60.4
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.0e-58 230.7 206 65.0
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.0e-58 230.7 206 65.0
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.0e-58 230.7 212 59.0
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.3e-58 230.3 206 63.6
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.3e-58 230.3 214 63.1
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.7e-58 229.9 208 61.1
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.3e-58 229.6 208 65.4
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 3.0e-58 229.2 209 60.8
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 3.0e-58 229.2 225 62.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 3.9e-58 228.8 211 65.9
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 5.1e-58 228.4 215 56.7
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 6.6e-58 228.0 220 60.9
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 8.6e-58 227.6 218 63.8
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.9e-57 226.5 203 61.1
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 4.3e-57 225.3 208 63.0
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 5.6e-57 224.9 230 58.3
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.6e-56 223.4 206 63.1
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 2.1e-56 223.0 203 70.0
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 6.2e-56 221.5 208 61.5
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 8.1e-56 221.1 200 57.5
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.1e-55 220.7 221 61.1
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.2e-54 217.2 187 70.1
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.0e-54 216.5 206 59.7
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 2.9e-53 212.6 209 56.9
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 4.9e-53 211.8 152 75.7
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.4e-52 209.5 211 56.4
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 5.4e-52 208.4 211 57.3
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.2e-51 207.2 215 60.5
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.6e-51 206.8 203 63.5
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.7e-51 206.1 202 54.5
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 4.6e-51 205.3 160 65.0
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 5.1e-50 201.8 201 58.7
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 6.6e-50 201.4 161 67.1
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 3.3e-49 199.1 228 56.6
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.6e-49 198.4 162 67.9
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 9.5e-49 197.6 213 54.9
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 3.1e-47 192.6 207 56.0
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 4.0e-47 192.2 210 54.8
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 4.0e-47 192.2 211 56.4
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 7.1e-44 181.4 214 52.3
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.0e-42 177.6 133 71.4
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 5.1e-42 175.3 220 45.9
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 3.3e-41 172.6 217 53.9
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.3e-41 172.2 194 50.0
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 3.6e-40 169.1 189 53.4
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.2e-37 159.8 141 65.2
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 1.1e-36 157.5 118 71.2
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.9e-36 156.8 143 55.9
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.6e-35 153.7 186 47.3
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 6.0e-35 151.8 210 41.9
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 2.3e-34 149.8 146 54.1
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 3.0e-34 149.4 220 44.5
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 6.6e-34 148.3 200 43.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 8.7e-34 147.9 213 39.9
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.5e-33 147.1 145 48.3
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.5e-33 147.1 226 43.8
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.6e-32 143.7 218 41.3
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.1e-31 141.0 209 44.0
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.8e-31 140.2 147 51.7
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.8e-31 140.2 151 44.4
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 4.0e-31 139.0 201 40.8
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 4.9e-29 132.1 208 38.5
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.6e-27 127.1 142 52.1
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 4.6e-27 125.6 151 47.7
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.8e-26 123.6 104 57.7
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 5.1e-26 122.1 199 40.7
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.7e-26 121.7 123 59.3
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.3e-25 119.4 123 58.5
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 2.1e-24 116.7 205 37.1
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 3.7e-24 115.9 88 51.1
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 2.4e-23 113.2 152 37.5
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 4.5e-22 109.0 139 42.4
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 2.2e-21 106.7 85 54.1
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 2.1e-19 100.1 115 53.9
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 2.1e-19 100.1 197 41.6
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.5e-19 99.4 87 46.0
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.0e-19 98.6 104 42.3
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.3e-18 96.7 113 58.4
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.7e-18 95.1 86 46.5
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 2.1e-16 90.1 103 43.7
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.1e-15 87.8 97 52.6
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 7.6e-14 81.6 115 42.6
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 2.2e-13 80.1 179 37.4
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 1.5e-09 67.4 77 49.4
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 1.5e-09 67.4 75 50.7
CiPaw.05G236000 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.3e-09 66.2 76 55.3
Ah.00g000610 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.4e-07 60.1 81 43.2
AT4G18692 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 5.9e-06 55.5 70 48.6


User provided reference genes

Program Settings