Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 2.5e-65 251.9 121 100.0
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 6.2e-24 114.4 106 61.3
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 3.4e-22 108.6 92 60.9
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 5.8e-22 107.8 93 55.9
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 1.7e-21 106.3 93 59.1
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 2.2e-21 105.9 93 59.1
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 3.7e-21 105.1 93 58.1
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 4.9e-21 104.8 83 62.7
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 4.1e-20 101.7 92 59.8
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 5.4e-20 101.3 92 58.7
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 2.0e-19 99.4 85 60.0
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 4.6e-19 98.2 87 58.6
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 7.8e-19 97.4 92 57.6
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.3e-18 95.9 90 58.9
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 5.0e-18 94.7 87 57.5
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 1.1e-17 93.6 93 55.9
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 5.6e-17 91.3 87 56.3
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 9.5e-17 90.5 87 55.2
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 9.5e-17 90.5 79 62.0
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 9.5e-17 90.5 93 51.6
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.2e-16 90.1 87 55.2
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.1e-16 89.4 87 55.2
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 2.1e-16 89.4 93 50.5
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 3.6e-16 88.6 93 50.5
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 8.1e-16 87.4 87 54.0
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 1.8e-15 86.3 93 50.5
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 4.0e-15 85.1 84 57.1
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.5e-14 83.2 93 48.4
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 5.8e-14 81.3 94 50.0
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 5.8e-14 81.3 91 48.4
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 9.8e-14 80.5 93 47.3
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.3e-13 80.1 93 47.3
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.3e-13 80.1 93 46.2
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.2e-13 79.3 106 44.3
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 2.9e-13 79.0 82 51.2
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.7e-13 78.6 94 48.9
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 1.1e-12 77.0 84 52.4
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 3.2e-12 75.5 77 50.6
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 4.1e-12 75.1 83 53.0
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 4.1e-12 75.1 89 46.1
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 5.4e-12 74.7 95 46.3
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 7.1e-12 74.3 82 48.8
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 7.1e-12 74.3 84 47.6
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 1.6e-11 73.2 85 50.6
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.1e-11 72.8 95 44.2
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 3.5e-11 72.0 90 45.6
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 3.5e-11 72.0 95 44.2
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 6.0e-11 71.2 94 45.7
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 1.3e-10 70.1 93 45.2
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 3.0e-10 68.9 97 42.3
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 3.9e-10 68.6 93 41.9
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 8.6e-10 67.4 103 39.8
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 1.1e-09 67.0 93 43.0
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.1e-09 67.0 95 46.3
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.1e-09 67.0 95 41.1
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 1.5e-09 66.6 86 43.0
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 3.3e-09 65.5 83 45.8
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 4.3e-09 65.1 88 44.3
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 4.3e-09 65.1 48 52.1
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 5.6e-09 64.7 88 45.5
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 5.6e-09 64.7 86 47.7
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 7.3e-09 64.3 88 45.5
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 7.3e-09 64.3 96 40.6
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 9.5e-09 63.9 98 43.9
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 9.5e-09 63.9 98 43.9
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.6e-08 63.2 82 40.2
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 1.6e-08 63.2 93 43.0
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.6e-08 63.2 93 39.8
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 2.8e-08 62.4 88 45.5
Aa31LG2G4620 Aethionema arabicum HOM05D009946 ORTHO05D004401 4.7e-08 61.6 79 44.3
Eucgr.J02154 Eucalyptus grandis HOM05D004965 ORTHO05D004401 4.7e-08 61.6 78 43.6
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 4.7e-08 61.6 89 41.6
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 6.2e-08 61.2 63 49.2
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 8.1e-08 60.8 77 45.5
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 1.1e-07 60.5 88 45.5
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 1.4e-07 60.1 88 42.0
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.4e-07 60.1 74 47.3
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 1.4e-07 60.1 55 49.1
Nitab4.5_0001239g0080 Nicotiana tabacum HOM05D021089 ORTHO05D022961 2.3e-07 59.3 75 38.7
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 4.0e-07 58.5 96 39.6
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 4.0e-07 58.5 101 40.6
Cpa.g.sc5.310 Carica papaya HOM05D004965 ORTHO05D004401 6.8e-07 57.8 86 38.4
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 8.9e-07 57.4 88 42.0
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 1.2e-06 57.0 70 42.9
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 1.5e-06 56.6 76 38.2
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 1.5e-06 56.6 75 40.0
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 2.0e-06 56.2 86 44.2
FAN17G0917 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.6e-06 55.8 108 38.0
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 3.4e-06 55.5 75 44.0
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 3.4e-06 55.5 97 39.2
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 4.4e-06 55.1 96 39.6
Nitab4.5_0002265g0020 Nicotiana tabacum HOM05D021089 ORTHO05D022961 4.4e-06 55.1 89 33.7
Sabra08G0145000 Salix brachista HOM05D004965 ORTHO05D004401 4.4e-06 55.1 80 47.5
Sabra10G0027200 Salix brachista HOM05D004965 ORTHO05D004401 4.4e-06 55.1 100 43.0
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 4.4e-06 55.1 73 43.8
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 4.4e-06 55.1 91 36.3
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 5.8e-06 54.7 82 41.5
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 7.6e-06 54.3 35 65.7
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 7.6e-06 54.3 35 65.7
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 9.9e-06 53.9 85 38.8
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 9.9e-06 53.9 98 37.8
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 9.9e-06 53.9 94 38.3


User provided reference genes

Program Settings