Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 5.1e-75 284.3 137 100.0
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 9.4e-37 157.1 132 60.6
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 7.4e-26 120.9 132 49.2
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.7e-25 119.8 138 50.0
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 6.3e-25 117.9 133 50.4
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.8e-24 116.3 131 48.1
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 7.0e-24 114.4 136 46.3
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 9.1e-24 114.0 134 50.0
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 1.2e-23 113.6 136 49.3
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 1.6e-23 113.2 122 50.0
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 2.0e-23 112.8 138 48.6
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.6e-23 112.5 132 48.5
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 3.5e-23 112.1 132 49.2
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 4.5e-23 111.7 132 47.0
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 7.7e-23 110.9 131 46.6
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 7.7e-23 110.9 131 45.8
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 1.7e-22 109.8 136 46.3
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.2e-22 109.4 132 46.2
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.2e-22 109.4 132 46.2
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 3.8e-22 108.6 131 48.1
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 1.9e-21 106.3 121 46.3
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 2.7e-20 102.4 131 43.5
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 4.7e-20 101.7 141 46.1
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 6.1e-20 101.3 115 47.0
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 8.0e-20 100.9 138 44.2
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.4e-19 100.1 134 46.3
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 1.4e-19 100.1 134 44.0
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.8e-19 99.8 130 46.2
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 2.3e-19 99.4 141 46.1
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 4.0e-19 98.6 117 46.2
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 4.0e-19 98.6 143 45.5
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.0e-19 98.6 133 45.1
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 5.2e-19 98.2 117 45.3
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 5.2e-19 98.2 117 45.3
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 6.8e-19 97.8 133 41.4
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 8.8e-19 97.4 133 39.8
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 1.2e-18 97.1 119 45.4
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 1.5e-18 96.7 119 46.2
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.5e-18 96.7 137 40.9
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 2.0e-18 96.3 133 40.6
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 2.0e-18 96.3 117 42.7
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 2.0e-18 96.3 117 42.7
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 2.6e-18 95.9 129 41.1
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.4e-18 95.5 132 44.7
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 4.4e-18 95.1 129 43.4
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 4.4e-18 95.1 137 39.4
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 4.4e-18 95.1 136 41.9
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 9.7e-18 94.0 131 44.3
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 9.7e-18 94.0 120 46.7
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.3e-17 93.6 119 44.5
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.7e-17 93.2 115 43.5
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 1.7e-17 93.2 117 41.9
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.7e-17 93.2 119 44.5
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.7e-17 93.2 136 38.2
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 2.2e-17 92.8 136 38.2
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.2e-17 92.8 136 38.2
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.8e-17 92.4 119 43.7
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 2.8e-17 92.4 119 44.5
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 2.8e-17 92.4 129 42.6
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 2.8e-17 92.4 96 54.2
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 3.7e-17 92.0 93 51.6
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 6.3e-17 91.3 115 47.0
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 1.1e-16 90.5 120 42.5
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.4e-16 90.1 133 42.9
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.8e-16 89.7 113 47.8
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 1.8e-16 89.7 130 43.1
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 1.8e-16 89.7 139 40.3
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.4e-16 89.4 129 39.5
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.4e-16 89.4 124 42.7
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 5.3e-16 88.2 129 40.3
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 9.1e-16 87.4 132 44.7
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 9.1e-16 87.4 132 43.9
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 1.2e-15 87.0 130 42.3
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 4.5e-15 85.1 138 39.1
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 4.5e-15 85.1 131 42.0
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 4.5e-15 85.1 132 40.2
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 5.9e-15 84.7 132 42.4
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 5.9e-15 84.7 130 41.5
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 1.0e-14 84.0 129 38.8
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 1.0e-14 84.0 135 43.7
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 1.3e-14 83.6 116 42.2
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.3e-14 83.6 128 42.2
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.7e-14 83.2 134 38.1
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.7e-14 83.2 113 42.5
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.7e-14 83.2 135 43.7
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 2.2e-14 82.8 119 40.3
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 2.2e-14 82.8 129 41.1
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 2.9e-14 82.4 120 44.2
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 3.8e-14 82.0 130 39.2
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 5.0e-14 81.6 128 37.5
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 6.5e-14 81.3 121 39.7
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.1e-13 80.5 137 38.0
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.5e-13 80.1 129 40.3
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 1.9e-13 79.7 113 45.1
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.9e-13 79.7 129 38.8
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 1.9e-13 79.7 128 40.6
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.9e-13 79.7 129 40.3
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 7.2e-13 77.8 130 41.5
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 1.2e-12 77.0 92 45.7
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 2.7e-12 75.9 131 37.4
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 2.7e-12 75.9 131 37.4
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 2.7e-12 75.9 67 56.7
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 3.6e-12 75.5 127 35.4
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 6.1e-12 74.7 86 50.0
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 6.1e-12 74.7 99 46.5
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 6.1e-12 74.7 99 46.5
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 8.0e-12 74.3 173 32.4
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 8.0e-12 74.3 67 55.2
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.0e-11 73.9 121 40.5
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 1.8e-11 73.2 67 53.7
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.0e-11 72.4 118 40.7
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 3.0e-11 72.4 131 39.7
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 3.0e-11 72.4 100 42.0
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 4.0e-11 72.0 68 52.9
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 6.8e-11 71.2 131 35.9
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 3.4e-10 68.9 116 44.0
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.4e-10 68.9 114 37.7
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 4.4e-10 68.6 63 54.0
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 5.7e-10 68.2 145 33.8
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 5.7e-10 68.2 115 38.3
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.3e-09 67.0 114 36.8
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 2.8e-09 65.9 122 38.5
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 4.8e-09 65.1 68 50.0
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 6.3e-09 64.7 59 52.5
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 6.3e-09 64.7 102 35.3
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 6.3e-09 64.7 60 53.3
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 6.3e-09 64.7 131 36.6
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.1e-08 63.9 105 43.8
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.8e-08 63.2 59 50.8
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 4.1e-08 62.0 62 48.4
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 9.1e-08 60.8 59 49.2
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.6e-07 60.1 55 52.7
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 3.5e-07 58.9 38 63.2
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 4.5e-07 58.5 113 36.3
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.3e-06 56.2 97 42.3
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 3.8e-06 55.5 82 40.2
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 6.6e-06 54.7 62 53.2
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 6.6e-06 54.7 33 60.6


User provided reference genes

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