Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013405m.g Citrus clementina HOM05D008136 ORTHO05D002052 2.8e-160 568.5 289 100.0
Atru.chr8.1380 Acer truncatum HOM05D008136 ORTHO05D002052 2.7e-25 120.2 271 31.0
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 3.5e-25 119.8 178 39.3
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 2.1e-22 110.5 289 32.5
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 2.1e-22 110.5 289 32.5
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 4.0e-21 106.3 240 30.8
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 5.2e-21 105.9 289 32.9
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 5.2e-21 105.9 261 32.6
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 5.2e-21 105.9 289 32.9
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.2e-20 104.8 234 32.5
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 1.5e-20 104.4 177 31.6
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 6.4e-19 99.0 259 29.7
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 6.4e-19 99.0 281 29.5
Thhalv10010982m.g Eutrema salsugineum HOM05D008136 ORTHO05D002052 5.4e-18 95.9 289 31.8
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 7.1e-18 95.5 272 31.6
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 7.1e-18 95.5 279 31.9
Sp5g09840 Schrenkiella parvula HOM05D008136 ORTHO05D002052 9.2e-18 95.1 268 31.7
Potri.016G071200 Populus trichocarpa HOM05D038355 ORTHO05D002052 1.6e-17 94.4 256 31.2
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.1e-17 94.0 185 30.8
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 6.0e-17 92.4 232 31.5
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 7.8e-17 92.0 209 29.7
Carub.0005s1885 Capsella rubella HOM05D008136 ORTHO05D002052 1.7e-16 90.9 210 32.4
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 1.7e-16 90.9 161 31.1
BcaC06g32916 Brassica carinata HOM05D008136 ORTHO05D002052 2.3e-16 90.5 275 32.0
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 2.3e-16 90.5 279 28.3
AT3G52460 Arabidopsis thaliana HOM05D008136 ORTHO05D002052 1.1e-15 88.2 275 28.7
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 1.1e-15 88.2 222 28.8
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.5e-15 87.8 272 27.6
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 1.9e-15 87.4 231 29.0
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.9e-15 87.4 178 29.8
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 9.6e-15 85.1 281 29.2
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 1.2e-14 84.7 224 28.1
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 1.2e-14 84.7 239 32.2
CiPaw.10G016800 Carya illinoinensis HOM05D008136 ORTHO05D002052 1.2e-14 84.7 167 29.9
Manes.09G046600 Manihot esculenta HOM05D002687 ORTHO05D002052 1.2e-14 84.7 213 27.2
Haze_19713 Corylus avellana HOM05D008136 ORTHO05D002052 3.6e-14 83.2 276 29.3
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.6e-14 83.2 232 27.6
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 4.7e-14 82.8 249 29.7
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.7e-14 82.8 260 27.7
AL5G33110 Arabidopsis lyrata HOM05D008136 ORTHO05D002052 8.1e-14 82.0 290 29.7
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 1.1e-13 81.6 228 26.3
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.1e-13 81.6 251 30.3
BcaC06g33391 Brassica carinata HOM05D008136 ORTHO05D002052 1.8e-13 80.9 218 32.1
C07p46980 Brassica napus HOM05D008136 ORTHO05D002052 1.8e-13 80.9 218 32.1
BolC7t45215H Brassica oleracea HOM05D008136 ORTHO05D002052 1.8e-13 80.9 218 32.1
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 4.0e-13 79.7 271 28.0
QL07p036911 Quercus lobata HOM05D008136 ORTHO05D002052 4.0e-13 79.7 245 28.2
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 8.9e-13 78.6 232 26.7
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 1.2e-12 78.2 232 26.7
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 1.2e-12 78.2 232 26.7
CiPaw.09G020400 Carya illinoinensis HOM05D008136 ORTHO05D002052 1.2e-12 78.2 292 26.7
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 2.0e-12 77.4 183 28.4
Cpa.g.sc104.41 Carica papaya HOM05D015120 ORTHO05D010825 4.4e-12 76.3 170 31.8
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 5.8e-12 75.9 223 26.0
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 7.6e-12 75.5 228 25.4
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 9.9e-12 75.1 194 25.8
Rhsim03G0065900 Rhododendron simsii HOM05D008136 ORTHO05D002052 9.9e-12 75.1 278 30.9
A03p48880 Brassica napus HOM05D008136 ORTHO05D002052 1.3e-11 74.7 279 30.8
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.7e-11 74.3 262 27.1
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 1.7e-11 74.3 220 27.3
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 2.9e-11 73.6 264 26.9
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.9e-11 73.6 199 26.1
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.9e-11 73.6 199 26.1
Prupe.7G096800 Prunus persica HOM05D009874 ORTHO05D010825 3.8e-11 73.2 171 26.3
BraA03t13990Z Brassica rapa HOM05D008136 ORTHO05D002052 4.9e-11 72.8 278 29.5
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.1e-10 71.6 262 24.0
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 1.1e-10 71.6 210 26.7
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 1.4e-10 71.2 254 25.6
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 1.9e-10 70.9 258 25.6
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 1.9e-10 70.9 258 25.6
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 1.9e-10 70.9 258 25.6
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 3.2e-10 70.1 258 27.1
Oeu055534.1 Olea europaea HOM05D012176 ORTHO05D014468 3.2e-10 70.1 184 28.3
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 4.2e-10 69.7 258 25.2
Ca_01639_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 7.1e-10 68.9 263 24.7
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 7.1e-10 68.9 249 26.1
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 7.1e-10 68.9 235 27.2
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 9.3e-10 68.6 211 26.5
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 1.2e-09 68.2 242 26.9
Gohir.D09G131400 Gossypium hirsutum HOM05D008136 ORTHO05D002052 1.2e-09 68.2 199 23.1
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 1.6e-09 67.8 270 28.1
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 2.1e-09 67.4 246 25.2
AL4G21170 Arabidopsis lyrata HOM05D002687 ORTHO05D002052 2.7e-09 67.0 202 25.7
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 2.7e-09 67.0 257 25.3
PGR119G0132 Punica granatum HOM05D002687 ORTHO05D002052 2.7e-09 67.0 203 26.6
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 3.5e-09 66.6 258 24.8
Medtr2g087000 Medicago truncatula HOM05D002687 ORTHO05D002052 3.5e-09 66.6 198 24.2
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 6.0e-09 65.9 259 26.6
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 6.0e-09 65.9 255 23.5
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 7.8e-09 65.5 247 26.7
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 7.8e-09 65.5 189 27.0
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 7.8e-09 65.5 226 23.9
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 7.8e-09 65.5 249 27.7
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 7.8e-09 65.5 237 25.3
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 1.3e-08 64.7 222 25.2
Oeu052622.2 Olea europaea HOM05D022101 ORTHO05D022209 1.3e-08 64.7 243 27.6
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 2.3e-08 63.9 219 25.1
Dinv31752 Davidia involucrata HOM05D002687 ORTHO05D022209 3.9e-08 63.2 188 28.7
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 5.1e-08 62.8 222 24.3
DCAR_003063 Daucus carota HOM05D008136 ORTHO05D014468 5.1e-08 62.8 241 27.4
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 5.1e-08 62.8 234 25.6
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 6.6e-08 62.4 217 24.9
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 6.6e-08 62.4 206 26.2
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 6.6e-08 62.4 265 26.8
CDE12G0475 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 8.7e-08 62.0 203 24.6
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 1.1e-07 61.6 236 25.8
Psat5g260320 Pisum sativum HOM05D002687 ORTHO05D002052 1.1e-07 61.6 205 23.9
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 1.5e-07 61.2 188 22.3
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 1.5e-07 61.2 191 23.6
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 1.5e-07 61.2 262 26.0
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 1.5e-07 61.2 210 21.9
TPR.G4231 Trifolium pratense HOM05D002687 ORTHO05D002052 1.5e-07 61.2 200 24.0
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 1.9e-07 60.8 195 24.1
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 1.9e-07 60.8 262 24.0
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 1.9e-07 60.8 254 24.8
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 2.5e-07 60.5 193 25.4
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 3.3e-07 60.1 195 23.6
CDE04G2921 Ceratophyllum demersum HOM05D002687 ORTHO05D002052 3.3e-07 60.1 202 23.8
FvH4_3g40821 Fragaria vesca HOM05D010052 ORTHO05D010666 3.3e-07 60.1 186 30.6
FAN11G3829 Fragaria x ananassa HOM05D010052 ORTHO05D010666 3.3e-07 60.1 186 30.6
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 3.3e-07 60.1 187 25.1
Sp4g10070 Schrenkiella parvula HOM05D002687 ORTHO05D002052 3.3e-07 60.1 227 25.1
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 3.3e-07 60.1 199 24.6
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 5.6e-07 59.3 221 24.4
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 5.6e-07 59.3 237 24.9
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 5.6e-07 59.3 251 25.1
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 7.3e-07 58.9 216 24.5
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 7.3e-07 58.9 234 23.9
VMungo1080G0268 Vigna mungo HOM05D002687 ORTHO05D002052 7.3e-07 58.9 274 22.6
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 9.6e-07 58.5 200 23.5
FvH4_5g22901 Fragaria vesca HOM05D010052 ORTHO05D010666 1.3e-06 58.2 177 27.1
Gohir.D07G116000 Gossypium hirsutum HOM05D002687 ORTHO05D002052 1.3e-06 58.2 208 25.0
Sc12g0004850 Simmondsia chinensis HOM05D002687 ORTHO05D002052 1.3e-06 58.2 196 24.5
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 1.3e-06 58.2 251 23.5
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 1.6e-06 57.8 240 24.6
Gorai.006G150000 Gossypium raimondii HOM05D008136 ORTHO05D002052 1.6e-06 57.8 276 22.8
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 2.1e-06 57.4 251 25.5
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 2.1e-06 57.4 276 26.8
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 2.1e-06 57.4 188 23.4
Sabra09G0012300 Salix brachista HOM05D002687 ORTHO05D002052 2.1e-06 57.4 220 24.1
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 2.1e-06 57.4 264 25.4
VMungo1383G0618 Vigna mungo HOM05D008136 ORTHO05D002052 2.1e-06 57.4 228 26.3
Aqoxy1G00678 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 2.8e-06 57.0 257 22.6
Lj3g0009280 Lotus japonicus HOM05D002687 ORTHO05D002052 2.8e-06 57.0 181 22.7
Medtr7g106130 Medicago truncatula HOM05D008136 ORTHO05D002052 2.8e-06 57.0 213 26.3
Prupe.7G096900 Prunus persica HOM05D018155 ORTHO05D020655 2.8e-06 57.0 279 24.4
SGA_v2.0_scaffold31G12844 Striga asiatica HOM05D012176 ORTHO05D014468 2.8e-06 57.0 263 24.3
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 3.6e-06 56.6 207 24.6
Gorai.001G124500 Gossypium raimondii HOM05D002687 ORTHO05D002052 8.1e-06 55.5 208 25.0
Nitab4.5_0000020g0110 Nicotiana tabacum HOM05D012176 ORTHO05D014468 8.1e-06 55.5 243 23.9
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 8.1e-06 55.5 189 25.4


User provided reference genes

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