Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 2.4e-271 938.3 516 100.0
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 3.5e-209 731.9 520 75.0
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 4.3e-199 698.4 523 70.9
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 4.7e-198 694.9 522 70.5
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 2.3e-192 676.0 518 68.3
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 6.6e-192 674.5 524 71.4
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 2.5e-191 672.5 523 69.8
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 4.3e-191 671.8 520 67.9
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.2e-190 670.2 523 69.4
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 2.1e-190 669.5 520 68.5
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.8e-190 669.1 523 69.2
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 4.7e-190 668.3 520 67.7
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.8e-189 666.4 522 68.4
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 2.3e-189 666.0 522 68.6
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 4.0e-189 665.2 527 66.6
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 6.8e-189 664.5 524 67.4
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 9.8e-188 660.6 520 66.5
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.7e-187 659.8 523 68.8
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 6.4e-187 657.9 534 66.9
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 6.4e-187 657.9 523 66.3
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-186 657.1 516 65.9
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.4e-186 656.0 520 65.6
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 3.2e-186 655.6 521 67.8
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 4.1e-186 655.2 529 65.4
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.2e-186 654.1 520 65.4
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.6e-185 653.3 520 66.5
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 2.0e-185 652.9 520 66.9
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.6e-184 647.5 531 64.2
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.9e-183 646.4 534 64.4
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 4.3e-183 645.2 533 65.7
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 2.8e-182 642.5 529 66.5
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 3.6e-182 642.1 519 66.9
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 3.6e-182 642.1 519 66.9
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 4.7e-182 641.7 586 59.9
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 6.2e-182 641.3 520 65.8
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 2.9e-179 632.5 523 65.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 3.7e-179 632.1 545 62.8
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 1.9e-178 629.8 545 62.6
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.2e-177 627.1 526 63.3
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.2e-177 627.1 521 64.5
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 2.1e-177 626.3 519 64.5
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 7.8e-177 624.4 522 63.8
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.0e-176 624.0 520 66.5
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.3e-176 623.6 523 64.1
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.7e-176 623.2 523 65.4
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 2.3e-176 622.9 528 66.5
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.3e-176 622.9 523 63.9
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 3.0e-176 622.5 522 64.9
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 5.1e-176 621.7 523 64.6
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 5.1e-176 621.7 479 67.4
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.3e-175 618.6 523 63.3
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 2.8e-174 615.9 528 64.2
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 6.2e-174 614.8 516 63.6
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 8.1e-174 614.4 524 63.0
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 8.1e-174 614.4 431 72.2
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.8e-173 613.2 451 69.6
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 8.9e-173 610.9 431 72.9
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 8.9e-173 610.9 523 65.4
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 1.2e-172 610.5 521 62.4
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 3.4e-172 609.0 527 64.3
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 2.3e-168 596.3 522 62.6
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 3.3e-167 592.4 523 66.5
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 5.6e-167 591.7 530 60.0
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 7.3e-167 591.3 533 61.9
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.2e-166 590.5 430 68.8
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.6e-166 590.1 522 62.8
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.1e-166 589.7 469 64.4
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 8.1e-166 587.8 523 63.9
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.4e-165 587.0 528 61.4
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 2.4e-165 586.3 523 62.1
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 6.9e-165 584.7 525 61.7
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.2e-164 583.9 547 60.0
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.5e-164 583.6 525 60.0
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.5e-164 583.6 524 62.4
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.5e-164 583.6 523 62.3
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 2.6e-164 582.8 530 60.4
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 9.9e-164 580.9 521 62.2
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.3e-163 580.5 490 63.7
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 3.8e-163 578.9 525 60.6
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 6.4e-163 578.2 544 59.9
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 6.4e-163 578.2 524 61.8
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 8.4e-163 577.8 521 61.2
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 8.4e-163 577.8 521 61.2
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.6e-161 573.5 404 71.5
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 3.5e-161 572.4 553 60.6
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 9.0e-157 557.8 602 56.5
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.2e-156 557.4 538 56.3
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 3.4e-156 555.8 540 56.7
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 2.9e-155 552.7 485 63.7
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.1e-154 550.8 805 43.9
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 3.3e-151 539.3 390 68.5
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 2.1e-150 536.6 433 64.7
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 6.2e-150 535.0 387 68.7
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.4e-149 533.9 409 66.0
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 5.3e-149 531.9 501 60.3
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 4.9e-147 525.4 401 68.3
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 5.5e-146 521.9 639 52.7
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 9.3e-146 521.2 455 63.1
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 4.6e-145 518.8 463 62.4
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 7.1e-138 495.0 528 53.6
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 1.0e-136 491.1 564 51.1
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 3.9e-136 489.2 500 56.8
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.6e-134 483.8 482 57.1
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 8.5e-131 471.5 408 61.8
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.9e-130 470.3 422 61.4
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.7e-126 457.2 409 61.4
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 5.3e-125 452.2 543 49.4
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 3.6e-121 439.5 456 51.5
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 5.1e-120 435.6 454 52.9
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.1e-111 407.9 455 48.6
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.0e-111 407.1 446 53.6
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.3e-110 404.4 489 46.0
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 4.8e-110 402.5 507 46.0
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 2.6e-108 396.7 411 58.6
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 5.9e-108 395.6 453 51.4
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.3e-94 351.3 400 52.2
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 2.7e-84 317.0 300 55.3
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.1e-82 311.6 211 71.6
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.6e-79 300.4 446 40.1
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 2.4e-77 293.9 279 59.1
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 8.6e-75 285.4 438 40.2
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 2.6e-71 273.9 350 50.3
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.5e-66 258.1 499 33.9
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 1.6e-57 228.0 187 63.1
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 3.4e-55 220.3 234 55.6
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 3.9e-51 206.8 155 63.9
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 8.1e-49 199.1 267 43.8
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.9e-45 188.0 264 43.6
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.4e-45 187.6 246 45.1
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.8e-41 174.1 204 57.4
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 6.9e-40 169.5 112 72.3
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 3.4e-39 167.2 170 57.6
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.7e-38 164.9 367 33.0
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 2.2e-38 164.5 447 33.3
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 9.3e-37 159.1 171 54.4
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 2.1e-36 157.9 245 42.0
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-34 152.1 166 53.6
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 1.9e-34 151.4 129 59.7
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.5e-34 151.0 259 39.0
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 4.3e-34 150.2 93 75.3
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 7.4e-34 149.4 166 54.8
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 9.6e-34 149.1 238 41.2
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.1e-33 146.0 166 54.2
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 2.5e-29 134.4 112 64.3
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 1.0e-27 129.0 100 62.0
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.8e-25 120.2 118 54.2
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 8.2e-25 119.4 92 63.0
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 2.4e-24 117.9 133 55.6
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 2.6e-23 114.4 79 70.9
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 2.2e-22 111.3 221 37.6
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 1.9e-21 108.2 221 37.1
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 2.5e-21 107.8 237 33.3
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.0e-19 102.4 75 72.0
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 2.2e-17 94.7 135 47.4
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 2.0e-15 88.2 92 46.7
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 7.7e-15 86.3 125 35.2
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 1.7e-14 85.1 116 45.7
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.2e-14 84.7 63 66.7
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 8.5e-14 82.8 63 66.7
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.1e-13 82.4 84 54.8
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 6.3e-09 66.6 248 27.8
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 2.4e-08 64.7 38 76.3
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 2.4e-08 64.7 38 76.3
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 2.4e-08 64.7 38 76.3
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 2.4e-08 64.7 38 76.3
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 5.9e-07 60.1 45 64.4
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 5.9e-07 60.1 45 64.4
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 5.9e-07 60.1 45 64.4


User provided reference genes

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