Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 4.8e-35 150.6 75 100.0
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 3.6e-30 134.4 75 89.3
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 6.7e-29 130.2 75 88.0
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 6.7e-29 130.2 75 88.0
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 5.7e-28 127.1 75 82.7
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 1.7e-27 125.6 75 82.7
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 1.7e-27 125.6 72 83.3
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 2.2e-27 125.2 74 83.8
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 2.8e-27 124.8 69 87.0
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 2.8e-27 124.8 75 82.7
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 3.7e-27 124.4 75 84.0
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 4.8e-27 124.0 75 82.7
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 8.2e-27 123.2 74 82.4
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 1.1e-26 122.9 75 80.0
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 2.4e-26 121.7 75 84.0
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 3.1e-26 121.3 75 81.3
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 5.3e-26 120.6 75 82.7
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 7.0e-26 120.2 75 80.0
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 9.1e-26 119.8 75 80.0
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 9.1e-26 119.8 75 80.0
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 9.1e-26 119.8 75 80.0
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 1.5e-25 119.0 66 86.4
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 1.5e-25 119.0 75 81.3
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 2.0e-25 118.6 75 80.0
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 2.6e-25 118.2 75 78.7
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 2.6e-25 118.2 75 78.7
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 3.5e-25 117.9 66 87.9
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 3.5e-25 117.9 75 77.3
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 3.5e-25 117.9 67 85.1
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 4.5e-25 117.5 75 77.3
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 7.7e-25 116.7 75 77.3
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 7.7e-25 116.7 75 80.0
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.0e-24 116.3 69 82.6
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 1.0e-24 116.3 66 84.8
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 1.3e-24 115.9 66 86.4
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 1.3e-24 115.9 75 78.7
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 1.3e-24 115.9 66 84.8
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 1.7e-24 115.5 75 76.0
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 1.7e-24 115.5 75 78.7
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 3.8e-24 114.4 75 77.3
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 5.0e-24 114.0 73 75.3
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 5.0e-24 114.0 75 78.7
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 8.5e-24 113.2 75 76.0
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 8.5e-24 113.2 75 76.0
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 1.1e-23 112.8 69 81.2
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 1.9e-23 112.1 67 82.1
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.9e-23 112.1 72 76.4
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 1.9e-23 112.1 72 76.4
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 1.9e-23 112.1 75 74.7
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 2.5e-23 111.7 75 76.0
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 2.5e-23 111.7 75 77.3
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 2.5e-23 111.7 75 74.7
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 2.5e-23 111.7 75 74.7
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 3.2e-23 111.3 66 81.8
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 3.2e-23 111.3 66 83.3
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 5.5e-23 110.5 66 80.3
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 7.2e-23 110.2 75 69.3
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 7.2e-23 110.2 75 69.3
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 7.2e-23 110.2 70 74.3
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 9.4e-23 109.8 75 72.0
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 9.4e-23 109.8 66 81.8
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 9.4e-23 109.8 75 73.3
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 9.4e-23 109.8 75 73.3
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 1.2e-22 109.4 66 80.3
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 2.1e-22 108.6 75 68.0
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 2.1e-22 108.6 75 68.0
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 2.1e-22 108.6 75 68.0
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 2.1e-22 108.6 69 78.3
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 2.1e-22 108.6 69 79.7
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 2.1e-22 108.6 67 76.1
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 3.6e-22 107.8 66 81.8
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 3.6e-22 107.8 75 73.3
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 4.7e-22 107.5 75 72.0
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 4.7e-22 107.5 69 78.3
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 6.1e-22 107.1 67 76.1
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 6.1e-22 107.1 66 77.3
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 8.0e-22 106.7 69 78.3
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 1.4e-21 105.9 67 76.1
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 1.4e-21 105.9 75 69.3
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 3.0e-21 104.8 75 72.0
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 3.9e-21 104.4 71 70.4
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 3.9e-21 104.4 66 69.7
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 5.2e-21 104.0 67 74.6
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 6.7e-21 103.6 69 72.5
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 8.8e-21 103.2 66 78.8
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 8.8e-21 103.2 66 78.8
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 7.4e-20 100.1 69 68.1
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 6.3e-19 97.1 75 65.3
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 6.3e-19 97.1 66 77.3
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 8.2e-19 96.7 129 48.1
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 2.6e-17 91.7 66 65.2
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.3e-13 78.6 66 57.6
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 5.2e-13 77.4 60 66.7
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 1.2e-12 76.3 66 57.6
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.0e-12 75.5 66 57.6
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 4.4e-12 74.3 67 55.2
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 5.7e-12 73.9 66 50.0
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 1.1e-10 69.7 47 76.6
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 7.0e-10 67.0 66 48.5
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 9.1e-10 66.6 38 81.6
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 9.1e-10 66.6 38 81.6
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.6e-09 65.9 46 71.7
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 3.8e-08 61.2 67 43.3
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.5e-07 58.5 29 93.1
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 7.2e-07 57.0 53 58.5
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 8.0e-06 53.5 50 50.0


User provided reference genes

Program Settings