Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013233m.g Citrus clementina HOM05D008206 ORTHO05D010320 1.9e-40 168.7 83 100.0
Gohir.A10G100200 Gossypium hirsutum HOM05D008206 ORTHO05D010320 1.3e-17 92.8 81 59.3
Thecc.04G083900 Theobroma cacao HOM05D008206 ORTHO05D010320 1.3e-17 92.8 80 58.8
Cpa.g.sc14.94 Carica papaya HOM05D008206 ORTHO05D010320 2.9e-17 91.7 82 58.5
Cfa007572 Carpinus fangiana HOM05D008206 ORTHO05D010320 6.5e-17 90.5 78 56.4
Thecc.04G084200 Theobroma cacao HOM05D008206 ORTHO05D010320 8.5e-17 90.1 80 58.8
Haze_14514 Corylus avellana HOM05D008206 ORTHO05D010320 1.9e-16 89.0 78 56.4
CiPaw.03G025300 Carya illinoinensis HOM05D008206 ORTHO05D010320 2.5e-16 88.6 81 56.8
Gohir.D10G088300 Gossypium hirsutum HOM05D008206 ORTHO05D010320 2.7e-15 85.1 81 55.6
Gorai.011G097200 Gossypium raimondii HOM05D008206 ORTHO05D010320 8.0e-15 83.6 82 54.9
GSVIVG01011434001 Vitis vinifera HOM05D008206 ORTHO05D010320 8.0e-15 83.6 81 55.6
CiPaw.04G016300 Carya illinoinensis HOM05D008206 ORTHO05D010320 3.0e-14 81.6 82 53.7
TAR629G1342 Trochodendron aralioides HOM05D008206 ORTHO05D010320 1.5e-13 79.3 79 51.9
Gohir.A11G070300 Gossypium hirsutum HOM05D008206 ORTHO05D010320 2.6e-13 78.6 81 48.1
Gohir.D11G074000 Gossypium hirsutum HOM05D008206 ORTHO05D010320 4.4e-13 77.8 81 49.4
Gorai.007G079400 Gossypium raimondii HOM05D008206 ORTHO05D010320 4.4e-13 77.8 81 49.4
Manes.02G047166 Manihot esculenta HOM05D008206 ORTHO05D010320 5.7e-13 77.4 82 52.4
Manes.01G092200 Manihot esculenta HOM05D008206 ORTHO05D010320 9.8e-13 76.6 83 53.0
Gorai.008G139600 Gossypium raimondii HOM05D008206 ORTHO05D010320 3.7e-12 74.7 82 51.2
Sabra17G0074600 Salix brachista HOM05D008206 ORTHO05D010320 5.4e-11 70.9 81 49.4
Prupe.3G266100 Prunus persica HOM05D008206 ORTHO05D010320 1.6e-10 69.3 84 44.0
COL.COLO4_10319 Corchorus olitorius HOM05D008206 ORTHO05D010320 3.5e-10 68.2 48 60.4
Actinidia26223 Actinidia chinensis HOM05D008206 ORTHO05D010320 4.5e-10 67.8 81 55.6
MD09G1052600 Malus domestica HOM05D008206 ORTHO05D010320 1.0e-09 66.6 85 48.2
MD00G1125200 Malus domestica HOM05D008206 ORTHO05D010320 1.3e-09 66.2 85 45.9
Potri.004G122800 Populus trichocarpa HOM05D008206 ORTHO05D010320 1.3e-09 66.2 81 46.9
CANSAT64G2007 Cannabis sativa HOM05D008206 ORTHO05D010320 6.5e-09 63.9 84 47.6
Gohir.D11G074200 Gossypium hirsutum HOM05D008206 ORTHO05D010320 6.5e-09 63.9 76 40.8
Potri.017G084700 Populus trichocarpa HOM05D008206 ORTHO05D010320 8.5e-09 63.5 79 46.8
Sed0002436 Sechium edule HOM05D008206 ORTHO05D010320 1.1e-08 63.2 88 45.5
Psat3g197800 Pisum sativum HOM05D008206 ORTHO05D010320 1.5e-08 62.8 74 45.9
TPR.G28906 Trifolium pratense HOM05D008206 ORTHO05D010320 2.5e-08 62.0 79 49.4
Dinv33772 Davidia involucrata HOM05D008206 ORTHO05D010320 3.2e-08 61.6 75 46.7
Gohir.D12G128666 Gossypium hirsutum HOM05D008206 ORTHO05D010320 4.2e-08 61.2 80 46.2
arahy.Tifrunner.gnm1.ann1.BDSN0J Arachis hypogaea HOM05D008206 ORTHO05D010320 1.6e-07 59.3 79 46.8
Nn3g17269 Nelumbo nucifera HOM05D008206 ORTHO05D010320 1.6e-07 59.3 79 48.1
RcHm_v2.0_Chr2g0167761 Rosa chinensis HOM05D008206 ORTHO05D010320 1.6e-07 59.3 84 42.9
Actinidia17551 Actinidia chinensis HOM05D008206 ORTHO05D010320 2.1e-07 58.9 82 52.4
THA.LOC104822354 Tarenaya hassleriana HOM05D011054 ORTHO05D013197 2.1e-07 58.9 79 43.0
FAN14G5696 Fragaria x ananassa HOM05D008206 ORTHO05D010320 2.7e-07 58.5 81 43.2
FvH4_6g48260 Fragaria vesca HOM05D008206 ORTHO05D010320 3.6e-07 58.2 81 42.0
FAN02G1369 Fragaria x ananassa HOM05D008206 ORTHO05D010320 3.6e-07 58.2 81 42.0
FAN05G0177 Fragaria x ananassa HOM05D008206 ORTHO05D010320 3.6e-07 58.2 81 42.0
FAN05G4857 Fragaria x ananassa HOM05D008206 ORTHO05D010320 3.6e-07 58.2 81 42.0
FAN09G1639 Fragaria x ananassa HOM05D008206 ORTHO05D010320 4.7e-07 57.8 81 42.0
CSS0033569 Camellia sinensis var. sinensis HOM05D008206 ORTHO05D010320 1.8e-06 55.8 82 48.8
Eucgr.J01355 Eucalyptus grandis HOM05D008206 ORTHO05D010320 1.8e-06 55.8 71 42.3
Medtr7g010980 Medicago truncatula HOM05D008206 ORTHO05D010320 1.8e-06 55.8 80 45.0
ClCG10G015200 Citrullus lanatus HOM05D008206 ORTHO05D010320 2.3e-06 55.5 83 43.4
CsaV3_3G041320 Cucumis sativus L. HOM05D008206 ORTHO05D010320 2.3e-06 55.5 88 45.5
CSS0025041 Camellia sinensis var. sinensis HOM05D008206 ORTHO05D010320 4.0e-06 54.7 82 48.8
Carub.0006s1345 Capsella rubella HOM05D011054 ORTHO05D013197 5.2e-06 54.3 82 43.9


User provided reference genes

Program Settings