Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013207m.g Citrus clementina HOM05D007149 ORTHO05D008956 5.8e-46 187.2 94 100.0
Manes.01G108800 Manihot esculenta HOM05D007149 ORTHO05D008956 4.3e-41 171.0 94 89.4
TWI74G0718 Tripterygium wilfordii HOM05D007149 ORTHO05D008956 3.6e-40 167.9 94 86.2
Dinv34841 Davidia involucrata HOM05D007149 ORTHO05D008956 1.4e-39 166.0 94 86.2
THA.LOC104827153 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 3.1e-39 164.9 94 85.1
CiPaw.04G040600 Carya illinoinensis HOM05D007149 ORTHO05D008956 5.3e-39 164.1 91 89.0
Hund13727 Selenicereus undatus HOM05D007149 ORTHO05D008956 5.3e-39 164.1 94 84.0
Cfa007939 Carpinus fangiana HOM05D007149 ORTHO05D008956 1.2e-38 162.9 94 85.1
Gohir.D07G076000 Gossypium hirsutum HOM05D007149 ORTHO05D008956 1.2e-38 162.9 94 83.0
QL02p051591 Quercus lobata HOM05D007149 ORTHO05D008956 1.5e-38 162.5 93 88.2
Ca_13737_v3 Cicer arietinum L. HOM05D007149 ORTHO05D008956 2.0e-38 162.2 94 83.0
Nn4g23775 Nelumbo nucifera HOM05D007149 ORTHO05D008956 2.6e-38 161.8 88 87.5
Thecc.04G136400 Theobroma cacao HOM05D007149 ORTHO05D008956 4.5e-38 161.0 94 84.0
Ah.10g037580 Amaranthus hybridus HOM05D007149 ORTHO05D008956 5.8e-38 160.6 94 83.0
Gohir.A07G071500 Gossypium hirsutum HOM05D007149 ORTHO05D008956 7.6e-38 160.2 94 81.9
Gorai.001G080200 Gossypium raimondii HOM05D007149 ORTHO05D008956 7.6e-38 160.2 94 81.9
Hma1.2p1_0550F.1_g177300 Hydrangea macrophylla HOM05D007149 ORTHO05D008956 7.6e-38 160.2 94 81.9
Atru.chr8.867 Acer truncatum HOM05D007149 ORTHO05D008956 9.9e-38 159.8 94 84.0
COL.COLO4_16183 Corchorus olitorius HOM05D007149 ORTHO05D008956 9.9e-38 159.8 94 84.0
Solyc02g063085.1 Solanum lycopersicum HOM05D007149 ORTHO05D008956 3.8e-37 157.9 94 83.0
Sabra17G0093700 Salix brachista HOM05D007149 ORTHO05D008956 4.9e-37 157.5 94 81.9
CiPaw.03G060400 Carya illinoinensis HOM05D007149 ORTHO05D008956 8.4e-37 156.8 93 83.9
HanXRQChr12g0376461 Helianthus annuus HOM05D007149 ORTHO05D008956 8.4e-37 156.8 94 81.9
Lalb_Chr04g0257361 Lupinus albus HOM05D007149 ORTHO05D008956 8.4e-37 156.8 94 80.9
THA.LOC104803005 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 8.4e-37 156.8 94 80.9
Peaxi162Scf00501g00121 Petunia axillaris HOM05D007149 ORTHO05D008956 1.1e-36 156.4 94 81.9
Eucgr.J01478 Eucalyptus grandis HOM05D007149 ORTHO05D008956 1.4e-36 156.0 92 82.6
Lsat_1_v5_gn_3_78860 Lactuca sativa HOM05D007149 ORTHO05D008956 1.4e-36 156.0 88 85.2
Sp6g28070 Schrenkiella parvula HOM05D007149 ORTHO05D008956 1.4e-36 156.0 89 84.3
Actinidia15873 Actinidia chinensis HOM05D007149 ORTHO05D008956 3.2e-36 154.8 89 82.0
Cpa.g.sc179.16 Carica papaya HOM05D007149 ORTHO05D008956 3.2e-36 154.8 94 79.8
CDE11G0018 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 3.2e-36 154.8 90 81.1
EL10Ac2g04594 Beta vulgaris HOM05D007149 ORTHO05D008956 4.2e-36 154.5 94 78.7
vmacro05569 Vaccinium macrocarpon HOM05D007149 ORTHO05D008956 5.4e-36 154.1 88 85.2
CANSAT64G1005 Cannabis sativa HOM05D007149 ORTHO05D008956 7.1e-36 153.7 93 78.5
Os03g0257900 Oryza sativa ssp. japonica HOM05D007149 ORTHO05D008956 7.1e-36 153.7 89 83.1
Aa31LG11G13550 Aethionema arabicum HOM05D007149 ORTHO05D008956 1.2e-35 152.9 89 79.8
CsaV3_5G039180 Cucumis sativus L. HOM05D007149 ORTHO05D008956 1.2e-35 152.9 88 83.0
Aqoxy3G03934 Aquilegia oxysepala HOM05D007149 ORTHO05D008956 1.6e-35 152.5 93 80.6
AL6G26940 Arabidopsis lyrata HOM05D007149 ORTHO05D008956 1.6e-35 152.5 86 84.9
A10p23000 Brassica napus HOM05D007149 ORTHO05D008956 1.6e-35 152.5 89 80.9
BraA10t44369Z Brassica rapa HOM05D007149 ORTHO05D008956 1.6e-35 152.5 89 80.9
CSS0003707 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 1.6e-35 152.5 86 83.7
ATR0665G039 Amborella trichopoda HOM05D007149 ORTHO05D008956 2.1e-35 152.1 88 84.1
BcaC04g18912 Brassica carinata HOM05D007149 ORTHO05D008956 2.1e-35 152.1 89 80.9
C09p60970 Brassica napus HOM05D007149 ORTHO05D008956 2.1e-35 152.1 89 80.9
BolC9t58944H Brassica oleracea HOM05D007149 ORTHO05D008956 2.1e-35 152.1 89 80.9
Lj2g0020616 Lotus japonicus HOM05D007149 ORTHO05D008956 2.1e-35 152.1 94 76.6
Zm00001eb011230 Zea mays HOM05D007149 ORTHO05D008956 2.1e-35 152.1 89 82.0
Carub.0006s1425 Capsella rubella HOM05D007149 ORTHO05D008956 2.7e-35 151.8 89 82.0
Migut.H00206 Erythranthe guttata HOM05D007149 ORTHO05D008956 2.7e-35 151.8 88 81.8
RcHm_v2.0_Chr2g0162971 Rosa chinensis HOM05D007149 ORTHO05D008956 2.7e-35 151.8 92 77.2
Actinidia36312 Actinidia chinensis HOM05D007149 ORTHO05D008956 3.5e-35 151.4 89 79.8
Thhalv10015129m.g Eutrema salsugineum HOM05D007149 ORTHO05D008956 3.5e-35 151.4 86 83.7
PGR004G0481 Punica granatum HOM05D007149 ORTHO05D008956 3.5e-35 151.4 82 87.8
CAN.G953.15 Capsicum annuum HOM05D007149 ORTHO05D008956 4.6e-35 151.0 94 77.7
CARHR197250 Cardamine hirsuta HOM05D007149 ORTHO05D008956 4.6e-35 151.0 89 82.0
CSS0003918 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 6.0e-35 150.6 86 82.6
DCAR_017207 Daucus carota HOM05D007149 ORTHO05D008956 6.0e-35 150.6 94 76.6
Potri.017G113401 Populus trichocarpa HOM05D007149 ORTHO05D008956 6.0e-35 150.6 94 78.7
Cc07_g08920 Coffea canephora HOM05D007149 ORTHO05D008956 7.9e-35 150.2 89 80.9
unitig_899.g14509 Utricularia gibba HOM05D007149 ORTHO05D008956 7.9e-35 150.2 90 81.1
HPP92_011090 Vanilla planifolia HOM05D007149 ORTHO05D008956 7.9e-35 150.2 88 80.7
MELO3C022093.2 Cucumis melo HOM05D007149 ORTHO05D008956 1.0e-34 149.8 88 81.8
FvH4_6g45250 Fragaria vesca HOM05D007149 ORTHO05D008956 1.0e-34 149.8 92 76.1
FAN09G4869 Fragaria x ananassa HOM05D007149 ORTHO05D008956 1.0e-34 149.8 92 76.1
FAN14G5255 Fragaria x ananassa HOM05D007149 ORTHO05D008956 1.0e-34 149.8 92 76.1
BcaB08g36883 Brassica carinata HOM05D007149 ORTHO05D008956 1.3e-34 149.4 86 82.6
Psat1g079040 Pisum sativum HOM05D007149 ORTHO05D008956 1.3e-34 149.4 94 75.5
Sc11g0008240 Simmondsia chinensis HOM05D007149 ORTHO05D008956 1.3e-34 149.4 84 85.7
AT5G16060 Arabidopsis thaliana HOM05D007149 ORTHO05D008956 1.8e-34 149.1 89 79.8
Glyma.19G046200 Glycine max HOM05D007149 ORTHO05D008956 1.8e-34 149.1 93 76.3
Phvul.004G064400 Phaseolus vulgaris HOM05D007149 ORTHO05D008956 1.8e-34 149.1 93 76.3
GSVIVG01031069001 Vitis vinifera HOM05D007149 ORTHO05D008956 1.1e-33 146.4 88 78.4
MD07G1095900 Malus domestica HOM05D007149 ORTHO05D008956 1.9e-33 145.6 91 78.0
MD17G1105000 Malus domestica HOM05D007149 ORTHO05D008956 1.9e-33 145.6 94 76.6
PSO782G5258 Papaver somniferum HOM05D007149 ORTHO05D008956 1.9e-33 145.6 86 81.4
Medtr0024s0060 Medicago truncatula HOM05D007149 ORTHO05D008956 5.6e-33 144.1 84 82.1
Sed0025185 Sechium edule HOM05D007149 ORTHO05D008956 9.6e-33 143.3 88 79.5
PSO063G3907 Papaver somniferum HOM05D007149 ORTHO05D008956 1.6e-32 142.5 86 80.2
FAN09G3419 Fragaria x ananassa HOM05D007149 ORTHO05D008956 3.7e-32 141.4 103 68.0
Duzib133G0440 Durio zibethinus HOM05D007149 ORTHO05D008956 1.2e-30 136.3 126 58.7
FAN02G3200 Fragaria x ananassa HOM05D007149 ORTHO05D008956 1.5e-30 136.0 104 64.4
Nn3g17784 Nelumbo nucifera HOM05D007149 ORTHO05D008956 2.2e-29 132.1 77 79.2
arahy.Tifrunner.gnm1.ann1.2T9F1Z Arachis hypogaea HOM05D007149 ORTHO05D008956 1.9e-28 129.0 82 76.8
arahy.Tifrunner.gnm1.ann1.HVR4ZG Arachis hypogaea HOM05D007149 ORTHO05D008956 1.9e-28 129.0 82 76.8
Haze_14138 Corylus avellana HOM05D007149 ORTHO05D008956 1.9e-28 129.0 69 89.9
Nitab4.5_0001569g0020 Nicotiana tabacum HOM05D007149 ORTHO05D008956 1.6e-27 125.9 73 79.5
PGSC0003DMG400024179 Solanum tuberosum HOM05D007149 ORTHO05D008956 1.6e-27 125.9 78 76.9
Aa31LG2G17140 Aethionema arabicum HOM05D007149 ORTHO05D008956 3.5e-27 124.8 73 76.7
SalBow3G3356 Salvia bowleyana HOM05D007149 ORTHO05D008956 6.0e-27 124.0 68 88.2
AUR62014527 Chenopodium quinoa HOM05D007149 ORTHO05D008956 1.3e-26 122.9 71 78.9
TPR.G32450 Trifolium pratense HOM05D007149 ORTHO05D008956 1.3e-26 122.9 139 51.1
ClCG11G005400 Citrullus lanatus HOM05D007149 ORTHO05D008956 4.3e-25 117.9 66 86.4
Carub.0055s0008 Capsella rubella HOM05D007149 ORTHO05D008956 7.4e-25 117.1 65 86.2
CDE05G2183 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 7.4e-25 117.1 67 83.6
SalBow6G3599 Salvia bowleyana HOM05D007149 ORTHO05D008956 7.4e-25 117.1 65 83.1
SHI30170 Sapria himalayana HOM05D007149 ORTHO05D008956 7.4e-25 117.1 67 82.1
HPP92_011107 Vanilla planifolia HOM05D007149 ORTHO05D008956 7.4e-25 117.1 71 77.5
ECA246G4376 Erigeron canadensis HOM05D007149 ORTHO05D008956 9.6e-25 116.7 71 77.5
Sopen02g014160 Solanum pennellii HOM05D007149 ORTHO05D008956 9.6e-25 116.7 71 77.5
AagrBONN_evm.TU.Sc2ySwM_228.1220 Anthoceros agrestis HOM05D007149 ORTHO05D008956 6.9e-23 110.5 79 63.3
Pp3c20_17910 Physcomitrium patens HOM05D007149 ORTHO05D008956 3.4e-22 108.2 81 63.0
Prupe.3G238900 Prunus persica HOM05D007149 ORTHO05D008956 5.8e-22 107.5 69 71.0
SMO356G0237 Selaginella moellendorffii HOM05D007149 ORTHO05D008956 3.8e-21 104.8 77 63.6
Mapoly0073s0075 Marchantia polymorpha HOM05D007149 ORTHO05D008956 6.7e-18 94.0 65 63.1
RcHm_v2.0_Chr2g0163021 Rosa chinensis HOM05D007149 ORTHO05D008956 2.4e-15 85.5 67 64.2
Nitab4.5_0002288g0070 Nicotiana tabacum HOM05D007149 ORTHO05D008956 2.6e-14 82.0 88 55.7
SGA_v2.0_scaffold33G13472 Striga asiatica HOM05D007149 ORTHO05D008956 4.5e-14 81.3 45 80.0
MCO15G246 Micromonas commoda HOM05D007149 ORTHO05D008956 1.8e-10 69.3 71 43.7
PRCOL_00003753 Prasinoderma coloniale HOM05D007149 ORTHO05D008956 1.1e-09 66.6 80 46.2


User provided reference genes

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