Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 7.0e-50 200.3 100 100.0
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 1.5e-23 112.8 56 89.3
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 5.6e-23 110.9 56 91.1
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 3.6e-22 108.2 56 87.5
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.4e-21 105.5 76 68.4
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 6.9e-21 104.0 56 80.4
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.2e-20 103.2 56 80.4
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.2e-20 103.2 56 80.4
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.2e-20 103.2 56 80.4
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 1.5e-20 102.8 60 73.3
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 1.5e-20 102.8 58 75.9
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 5.8e-20 100.9 56 78.6
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.8e-20 100.9 58 75.9
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 5.8e-20 100.9 57 77.2
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 7.6e-20 100.5 56 78.6
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.7e-19 99.4 56 82.1
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.8e-19 98.2 56 80.4
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.8e-19 98.2 56 78.6
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 4.9e-19 97.8 58 75.9
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 4.9e-19 97.8 56 78.6
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.9e-19 97.8 53 81.1
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.9e-19 97.8 57 77.2
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.9e-19 97.8 53 81.1
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 4.9e-19 97.8 57 77.2
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 4.9e-19 97.8 53 81.1
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 4.9e-19 97.8 56 75.0
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 6.4e-19 97.4 56 78.6
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.4e-19 97.4 57 78.9
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 8.4e-19 97.1 56 78.6
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 8.4e-19 97.1 57 77.2
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.1e-18 96.7 64 71.9
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-18 96.7 56 76.8
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-18 96.7 56 76.8
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.4e-18 96.3 56 78.6
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.4e-18 96.3 56 78.6
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 1.4e-18 96.3 57 77.2
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 1.9e-18 95.9 56 73.2
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 1.9e-18 95.9 56 75.0
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.9e-18 95.9 62 71.0
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.9e-18 95.9 59 71.2
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.4e-18 95.5 56 75.0
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 2.4e-18 95.5 57 75.4
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 2.4e-18 95.5 53 79.2
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.4e-18 95.5 53 79.2
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.4e-18 95.5 53 79.2
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.4e-18 95.5 53 79.2
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.4e-18 95.5 53 79.2
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 2.4e-18 95.5 64 67.2
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 2.4e-18 95.5 56 76.8
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.2e-18 95.1 57 75.4
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 3.2e-18 95.1 56 73.2
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 3.2e-18 95.1 56 75.0
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 3.2e-18 95.1 56 78.6
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 4.2e-18 94.7 58 70.7
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 5.4e-18 94.4 56 73.2
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 5.4e-18 94.4 56 75.0
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 5.4e-18 94.4 57 71.9
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 7.1e-18 94.0 56 73.2
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 7.1e-18 94.0 56 75.0
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 7.1e-18 94.0 54 75.9
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 7.1e-18 94.0 56 75.0
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 7.1e-18 94.0 53 79.2
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 7.1e-18 94.0 56 75.0
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 7.1e-18 94.0 56 76.8
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 7.1e-18 94.0 56 76.8
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 7.1e-18 94.0 56 76.8
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 7.1e-18 94.0 56 76.8
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 9.3e-18 93.6 56 75.0
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 9.3e-18 93.6 53 79.2
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 9.3e-18 93.6 88 53.4
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 1.2e-17 93.2 56 73.2
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 1.2e-17 93.2 56 73.2
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.2e-17 93.2 56 71.4
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 1.2e-17 93.2 56 73.2
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 1.2e-17 93.2 56 73.2
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-17 93.2 51 80.4
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.2e-17 93.2 56 76.8
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 1.6e-17 92.8 50 82.0
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 1.6e-17 92.8 56 76.8
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 2.1e-17 92.4 56 71.4
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.1e-17 92.4 56 73.2
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.1e-17 92.4 56 73.2
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.1e-17 92.4 50 80.0
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 2.7e-17 92.0 50 80.0
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 2.7e-17 92.0 59 67.8
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 3.5e-17 91.7 53 73.6
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 3.5e-17 91.7 57 73.7
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 3.5e-17 91.7 56 71.4
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 3.5e-17 91.7 51 76.5
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.6e-17 91.3 53 73.6
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 4.6e-17 91.3 56 71.4
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 4.6e-17 91.3 56 75.0
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 4.6e-17 91.3 53 73.6
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.6e-17 91.3 53 75.5
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 4.6e-17 91.3 56 73.2
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 4.6e-17 91.3 57 71.9
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 6.0e-17 90.9 57 73.7
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.0e-16 90.1 50 78.0
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.0e-16 90.1 50 78.0
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.0e-16 90.1 56 69.6
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 1.0e-16 90.1 56 69.6
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 1.0e-16 90.1 50 78.0
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 1.0e-16 90.1 50 78.0
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 1.3e-16 89.7 57 70.2
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 1.3e-16 89.7 50 76.0
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 1.8e-16 89.4 55 74.5
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.8e-16 89.4 56 69.6
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.3e-16 89.0 57 71.9
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 3.0e-16 88.6 56 66.1
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.0e-16 88.6 50 74.0
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 3.9e-16 88.2 58 70.7
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 3.9e-16 88.2 51 74.5
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.9e-16 88.2 53 71.7
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 3.9e-16 88.2 69 59.4
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 5.1e-16 87.8 53 73.6
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 6.7e-16 87.4 53 69.8
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 6.7e-16 87.4 53 69.8
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 6.7e-16 87.4 46 84.8
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 8.7e-16 87.0 51 68.6
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 1.1e-15 86.7 58 67.2
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.5e-15 86.3 52 71.2
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.5e-15 86.3 63 65.1
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 1.9e-15 85.9 56 66.1
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 1.9e-15 85.9 56 66.1
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.9e-15 85.9 57 64.9
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 2.5e-15 85.5 56 67.9
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 4.3e-15 84.7 56 66.1
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 4.3e-15 84.7 58 65.5
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 4.3e-15 84.7 58 65.5
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 5.6e-15 84.3 60 60.0
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 7.4e-15 84.0 48 79.2
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.4e-15 84.0 62 62.9
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 9.6e-15 83.6 57 64.9
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 9.6e-15 83.6 57 64.9
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 9.6e-15 83.6 96 50.0
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.3e-14 83.2 57 66.7
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 1.6e-14 82.8 46 76.1
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 1.6e-14 82.8 46 76.1
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 2.1e-14 82.4 46 73.9
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 2.8e-14 82.0 49 75.5
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 2.8e-14 82.0 49 75.5
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 2.8e-14 82.0 49 75.5
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 2.8e-14 82.0 49 75.5
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 2.8e-14 82.0 49 75.5
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 2.8e-14 82.0 49 75.5
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 2.8e-14 82.0 56 66.1
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 3.7e-14 81.6 49 73.5
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 4.8e-14 81.3 93 49.5
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 4.8e-14 81.3 57 64.9
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 6.2e-14 80.9 45 82.2
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 6.2e-14 80.9 45 82.2
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 6.2e-14 80.9 45 82.2
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 6.2e-14 80.9 45 82.2
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 6.2e-14 80.9 45 82.2
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 6.2e-14 80.9 45 82.2
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 6.2e-14 80.9 56 66.1
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 8.1e-14 80.5 56 60.7
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.1e-13 80.1 46 73.9
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 1.8e-13 79.3 80 51.2
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.4e-13 79.0 41 85.4
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 2.4e-13 79.0 48 72.9
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.0e-13 78.2 50 68.0
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 5.3e-13 77.8 56 62.5
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 6.9e-13 77.4 56 62.5
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 6.9e-13 77.4 50 66.0
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 4.5e-12 74.7 85 45.9
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 5.8e-12 74.3 47 68.1
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 5.8e-12 74.3 47 68.1
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 7.6e-12 73.9 50 64.0
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 8.4e-11 70.5 51 54.9
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 3.2e-10 68.6 58 56.9
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 4.2e-10 68.2 51 51.0
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 5.5e-10 67.8 57 50.9
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 7.1e-10 67.4 41 75.6
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 9.3e-10 67.0 36 75.0
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 9.3e-10 67.0 50 62.0
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 9.3e-10 67.0 50 62.0
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 4.6e-09 64.7 40 75.0
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 3.0e-08 62.0 40 67.5
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 6.2e-06 54.3 45 53.3


User provided reference genes

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