Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.0e-84 316.6 155 100.0
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 2.2e-66 255.8 145 78.6
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 2.2e-66 255.8 145 78.6
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 3.7e-66 255.0 145 78.6
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.9e-65 252.7 145 79.3
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.1e-65 251.5 145 77.2
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 7.0e-65 250.8 145 77.2
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 9.2e-65 250.4 139 84.2
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 2.1e-64 249.2 137 85.4
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 2.7e-64 248.8 150 76.0
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 3.5e-64 248.4 140 79.3
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.5e-64 248.4 145 77.2
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 6.0e-64 247.7 141 81.6
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.0e-63 246.9 147 78.2
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.0e-63 246.9 141 78.7
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 1.0e-63 246.9 147 78.2
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 1.3e-63 246.5 147 75.5
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 1.7e-63 246.1 145 75.9
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 2.3e-63 245.7 145 75.9
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 3.0e-63 245.4 161 70.8
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 3.9e-63 245.0 145 75.2
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 5.1e-63 244.6 145 76.6
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 6.6e-63 244.2 145 75.2
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.5e-62 243.0 145 77.9
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 4.3e-62 241.5 145 71.7
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 7.3e-62 240.7 140 77.9
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.2e-61 240.0 145 73.8
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 1.2e-61 240.0 137 78.8
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 2.8e-61 238.8 140 77.1
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 8.1e-61 237.3 140 76.4
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 8.1e-61 237.3 137 80.3
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.4e-60 236.5 140 76.4
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 4.0e-60 235.0 140 75.7
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 5.2e-60 234.6 137 77.4
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 5.2e-60 234.6 140 75.0
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 6.8e-60 234.2 142 73.9
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 8.9e-60 233.8 143 73.4
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 2.6e-59 232.3 142 74.6
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.4e-59 231.5 140 76.4
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.4e-59 231.5 140 76.4
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 5.8e-59 231.1 144 72.9
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 9.9e-59 230.3 143 72.0
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.3e-58 229.9 140 75.7
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.7e-58 229.6 144 73.6
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.2e-58 229.2 142 73.9
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 2.2e-58 229.2 147 72.1
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 2.2e-58 229.2 140 76.4
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 4.9e-58 228.0 144 70.8
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 2.4e-57 225.7 143 74.8
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 2.4e-57 225.7 139 71.2
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 3.2e-57 225.3 143 75.5
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 4.1e-57 224.9 144 70.1
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 5.4e-57 224.6 159 67.3
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 5.4e-57 224.6 133 75.2
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 9.2e-57 223.8 144 71.5
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 9.2e-57 223.8 142 69.7
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 2.7e-56 222.2 142 69.0
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 2.7e-56 222.2 142 69.0
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 3.5e-56 221.9 145 70.3
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.6e-56 221.5 137 74.5
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.6e-56 221.5 137 74.5
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.0e-55 220.3 143 67.8
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.0e-55 220.3 143 67.8
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.0e-55 220.3 142 68.3
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 1.3e-55 219.9 144 70.1
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.0e-55 218.8 137 73.0
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 3.0e-55 218.8 133 75.2
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 3.9e-55 218.4 143 68.5
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 5.1e-55 218.0 143 67.1
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 6.6e-55 217.6 173 61.3
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 8.6e-55 217.2 145 69.7
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.1e-54 216.9 143 68.5
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.9e-54 216.1 120 80.0
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.9e-54 216.1 142 70.4
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.9e-54 216.1 145 70.3
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.5e-54 215.7 137 73.0
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 4.3e-54 214.9 142 66.2
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.6e-54 214.5 137 69.3
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 1.2e-53 213.4 143 67.1
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.7e-53 211.5 134 70.1
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 8.1e-53 210.7 145 67.6
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 1.1e-52 210.3 142 70.4
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 1.8e-52 209.5 140 71.4
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.8e-52 209.5 120 78.3
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 2.4e-52 209.1 140 70.0
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 5.2e-52 208.0 142 68.3
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 2.0e-51 206.1 144 66.7
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 2.6e-51 205.7 204 52.9
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 3.4e-51 205.3 145 65.5
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 3.4e-51 205.3 145 65.5
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 5.8e-51 204.5 138 68.8
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 5.8e-51 204.5 147 64.6
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 9.9e-51 203.8 135 71.1
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 9.9e-51 203.8 122 76.2
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 1.7e-50 203.0 140 70.0
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 2.2e-50 202.6 135 68.1
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.2e-50 202.6 142 64.8
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.9e-50 202.2 141 66.7
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 4.9e-50 201.4 140 67.9
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.4e-50 201.1 133 66.2
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 1.9e-49 199.5 139 64.7
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.9e-49 199.5 145 62.1
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.4e-49 199.1 149 63.8
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 2.4e-49 199.1 142 62.0
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.2e-49 198.7 142 67.6
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.2e-49 198.4 139 66.2
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 9.2e-49 197.2 137 66.4
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 1.6e-48 196.4 138 67.4
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 1.0e-47 193.7 139 64.7
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 1.7e-47 193.0 142 62.0
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.7e-47 193.0 141 64.5
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 3.0e-47 192.2 147 59.9
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 6.6e-47 191.0 120 75.0
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.1e-46 190.3 120 74.2
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 1.9e-46 189.5 147 59.9
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 3.3e-46 188.7 120 73.3
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 5.6e-46 188.0 154 57.1
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 3.6e-45 185.3 111 73.0
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 6.2e-45 184.5 144 56.9
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 3.1e-44 182.2 147 59.2
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.2e-43 180.3 148 58.1
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 1.2e-43 180.3 145 53.1
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.5e-43 179.9 142 61.3
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 2.0e-43 179.5 139 59.0
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 2.0e-43 179.5 115 72.2
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 3.4e-43 178.7 138 60.1
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 4.4e-43 178.3 117 67.5
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 5.8e-43 177.9 111 73.9
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 1.1e-41 173.7 118 66.9
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.6e-40 169.9 116 67.2
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.3e-38 162.2 98 69.4
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 1.3e-37 160.2 144 54.9
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.1e-37 159.5 144 51.4
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 3.6e-37 158.7 132 56.8
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 9.9e-35 150.6 133 53.4
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 9.9e-35 150.6 133 53.4
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.9e-31 138.7 133 48.9
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.1e-28 130.6 91 68.1
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 2.4e-28 129.4 131 49.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 9.0e-28 127.5 126 49.2
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.4e-27 125.6 127 50.4
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 3.2e-25 119.0 99 55.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 3.2e-25 119.0 99 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.0e-23 114.0 141 41.1
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.8e-23 113.2 147 42.9
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 3.9e-23 112.1 93 54.8
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.9e-22 109.8 143 42.0
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.5e-22 109.4 143 41.3
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.7e-22 108.2 134 43.3
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 3.7e-21 105.5 152 38.2
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.4e-20 102.8 141 41.1
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.2e-16 90.5 55 69.1
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 1.8e-15 86.7 99 47.5
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 2.3e-15 86.3 49 77.6
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 3.0e-15 85.9 112 41.1
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-14 84.0 49 75.5
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-14 84.0 49 75.5
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-14 84.0 49 75.5
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 1.1e-14 84.0 65 55.4
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 1.5e-14 83.6 59 59.3
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.9e-14 83.2 135 35.6
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.4e-12 77.0 98 39.8
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 2.9e-10 69.3 116 39.7
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 8.5e-10 67.8 49 59.2
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 1.2e-08 63.9 32 90.6
HanXRQChr11g0343111 Helianthus annuus HOM05D004462 ORTHO05D005231 9.7e-06 54.3 41 56.1


User provided reference genes

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