Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 5.4e-84 314.3 160 100.0
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 1.2e-75 286.6 160 88.8
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.2e-75 286.6 160 88.8
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.2e-75 286.6 160 88.8
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.2e-75 286.6 160 88.8
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.2e-75 286.6 160 88.8
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.2e-75 286.6 160 88.8
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 2.0e-75 285.8 160 88.8
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 4.5e-75 284.6 160 88.1
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 5.9e-75 284.3 160 86.9
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.3e-74 283.1 160 86.9
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.7e-74 282.7 160 87.5
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.7e-74 282.7 160 87.5
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 3.8e-74 281.6 160 86.9
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 5.0e-74 281.2 158 86.1
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.5e-73 279.6 158 85.4
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.5e-73 278.9 157 87.3
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 5.6e-73 277.7 160 85.0
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 9.5e-73 276.9 160 84.4
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.6e-72 276.2 160 84.4
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.1e-72 275.8 158 84.8
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 2.1e-72 275.8 158 82.9
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 2.8e-72 275.4 158 84.2
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 3.6e-72 275.0 155 87.1
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 1.8e-71 272.7 156 87.2
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 2.3e-71 272.3 160 83.8
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 4.0e-71 271.6 160 84.4
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 4.0e-71 271.6 155 86.5
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 4.0e-71 271.6 155 85.8
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 6.8e-71 270.8 160 82.5
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 8.9e-71 270.4 156 85.9
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 2.0e-70 269.2 155 85.8
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 2.0e-70 269.2 155 85.8
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 3.4e-70 268.5 154 85.7
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 4.4e-70 268.1 158 81.0
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 5.8e-70 267.7 160 81.9
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.8e-70 267.7 157 84.1
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 7.5e-70 267.3 160 81.9
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 9.8e-70 266.9 154 83.8
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 9.8e-70 266.9 158 83.5
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.7e-69 266.2 154 83.8
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.2e-69 265.8 153 84.3
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.2e-69 265.8 153 84.3
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 2.9e-69 265.4 154 84.4
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 4.9e-69 264.6 154 83.8
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 6.4e-69 264.2 160 79.4
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 8.3e-69 263.8 157 81.5
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 8.3e-69 263.8 154 84.4
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 8.3e-69 263.8 156 83.3
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.9e-68 262.7 154 86.4
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.2e-68 261.9 158 81.0
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.4e-68 261.2 158 81.6
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.6e-67 259.6 158 82.3
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.6e-67 259.6 154 84.4
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.0e-67 259.2 154 81.2
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 4.6e-67 258.1 158 77.8
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.7e-66 256.1 154 80.5
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.7e-66 256.1 157 80.9
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 3.0e-66 255.4 158 79.7
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 8.6e-66 253.8 160 75.0
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 8.6e-66 253.8 160 76.9
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 8.6e-66 253.8 157 79.6
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 8.6e-66 253.8 160 76.9
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.5e-65 253.1 160 75.6
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.9e-65 252.7 155 79.4
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.9e-65 252.7 160 78.8
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 4.3e-65 251.5 158 75.9
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 4.3e-65 251.5 158 76.6
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 5.6e-65 251.1 154 80.5
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 5.6e-65 251.1 154 80.5
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 5.6e-65 251.1 157 77.1
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 5.6e-65 251.1 160 74.4
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 7.3e-65 250.8 158 76.6
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 7.3e-65 250.8 157 78.3
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.2e-64 250.0 160 74.4
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 1.2e-64 250.0 157 77.7
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 1.2e-64 250.0 157 77.1
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.2e-64 250.0 157 77.1
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.6e-64 249.6 154 79.9
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.6e-64 249.6 160 76.9
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 3.6e-64 248.4 157 77.1
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 4.7e-64 248.1 160 74.4
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 4.7e-64 248.1 207 63.3
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 2.3e-63 245.7 154 76.6
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 3.1e-63 245.4 160 74.4
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 3.1e-63 245.4 161 73.9
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 3.1e-63 245.4 161 73.9
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 3.1e-63 245.4 161 73.9
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 3.1e-63 245.4 161 73.9
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 3.1e-63 245.4 161 73.9
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 6.8e-63 244.2 153 75.2
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 6.8e-63 244.2 158 77.8
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 6.8e-63 244.2 158 77.8
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 6.8e-63 244.2 159 74.2
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.2e-62 243.4 160 72.5
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 2.0e-62 242.7 155 74.2
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 2.6e-62 242.3 158 74.7
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 3.4e-62 241.9 159 73.6
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 3.4e-62 241.9 159 73.6
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 3.4e-62 241.9 159 73.6
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 4.4e-62 241.5 157 75.2
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 4.4e-62 241.5 155 73.5
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 7.5e-62 240.7 141 83.7
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.3e-61 240.0 158 74.7
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 1.7e-61 239.6 158 74.7
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.7e-61 238.4 143 79.7
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 6.4e-61 237.7 158 75.3
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 8.3e-61 237.3 154 76.6
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.1e-60 236.9 160 72.5
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 1.9e-60 236.1 155 75.5
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 2.1e-59 232.6 245 54.7
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 4.6e-59 231.5 154 71.4
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 8.6e-58 227.3 135 82.2
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 2.8e-56 222.2 154 70.8
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 3.6e-56 221.9 144 76.4
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 3.1e-55 218.8 125 86.4
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 7.5e-54 214.2 161 67.1
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.9e-53 212.2 144 71.5
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 3.7e-53 211.8 123 84.6
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 8.3e-53 210.7 144 70.1
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 7.1e-52 207.6 162 64.8
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 7.8e-51 204.1 207 52.7
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 3.9e-50 201.8 301 43.2
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 5.2e-47 191.4 112 81.2
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 8.9e-47 190.7 111 81.1
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 1.7e-45 186.4 187 54.5
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 4.9e-45 184.9 158 58.2
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.7e-43 179.1 144 66.7
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 3.4e-38 162.2 98 83.7
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 3.4e-38 162.2 113 74.3
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 3.0e-34 149.1 101 73.3
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.9e-33 146.4 133 55.6
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 1.4e-31 140.2 154 46.1
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.5e-30 136.7 149 48.3
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.6e-30 136.0 149 48.3
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.9e-28 129.8 123 56.1
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 2.7e-27 125.9 152 42.8
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 7.9e-27 124.4 146 52.7
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 1.3e-26 123.6 77 74.0
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 1.6e-24 116.7 143 44.1
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.4e-23 113.6 132 44.7
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.8e-23 113.2 96 64.6
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.8e-23 113.2 96 64.6
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 6.9e-23 111.3 65 81.5
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 9.0e-23 110.9 65 81.5
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 3.4e-22 109.0 76 68.4
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.7e-21 106.7 64 81.2
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.1e-20 104.0 144 40.3
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.5e-20 102.8 64 78.1
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 4.6e-19 98.6 78 65.4
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 1.8e-18 96.7 101 55.4
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 3.2e-12 75.9 146 39.7
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 6.7e-10 68.2 69 56.5
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 1.9e-09 66.6 69 55.1
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 2.0e-06 56.6 47 61.7


User provided reference genes

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