Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012771m.g Citrus clementina HOM05D007804 ORTHO05D009828 1.2e-104 383.3 209 100.0
Cfa007487 Carpinus fangiana HOM05D007804 ORTHO05D009828 1.6e-24 117.1 168 47.0
Duzib147G0590 Durio zibethinus HOM05D007804 ORTHO05D009828 1.2e-22 110.9 163 46.0
Prupe.3G275600 Prunus persica HOM05D007804 ORTHO05D009828 5.8e-22 108.6 184 41.3
Gohir.D09G022600 Gossypium hirsutum HOM05D007804 ORTHO05D009828 1.3e-21 107.5 186 46.2
Cpa.g.sc14.66 Carica papaya HOM05D007804 ORTHO05D009828 3.8e-21 105.9 193 44.0
Gohir.A09G023300 Gossypium hirsutum HOM05D007804 ORTHO05D009828 4.9e-21 105.5 192 44.3
Thecc.04G069800 Theobroma cacao HOM05D007804 ORTHO05D009828 6.5e-21 105.1 185 42.7
CiPaw.03G032600 Carya illinoinensis HOM05D007804 ORTHO05D009828 1.1e-20 104.4 196 41.8
Gorai.006G026600 Gossypium raimondii HOM05D007804 ORTHO05D009828 2.5e-20 103.2 199 42.7
QL02p079311 Quercus lobata HOM05D007804 ORTHO05D009828 4.2e-20 102.4 196 39.3
Manes.15G177500 Manihot esculenta HOM05D007804 ORTHO05D009828 2.7e-19 99.8 169 41.4
Atru.chr8.2473 Acer truncatum HOM05D007804 ORTHO05D009828 2.3e-18 96.7 195 43.6
COL.COLO4_36996 Corchorus olitorius HOM05D007804 ORTHO05D009828 1.1e-17 94.4 181 40.9
Glyma.19G017000 Glycine max HOM05D007804 ORTHO05D009828 1.5e-17 94.0 187 42.2
Lj2g0027470 Lotus japonicus HOM05D007804 ORTHO05D009828 9.6e-17 91.3 178 42.7
Manes.17G117500 Manihot esculenta HOM05D007804 ORTHO05D009828 1.3e-16 90.9 162 39.5
Glyma.13G067400 Glycine max HOM05D007804 ORTHO05D009828 3.7e-16 89.4 186 39.8
FvH4_6g49720 Fragaria vesca HOM05D007804 ORTHO05D009828 2.4e-15 86.7 181 39.2
FAN05G0497 Fragaria x ananassa HOM05D007804 ORTHO05D009828 2.4e-15 86.7 181 39.2
FAN14G3729 Fragaria x ananassa HOM05D007804 ORTHO05D009828 2.4e-15 86.7 181 39.2
FAN09G3343 Fragaria x ananassa HOM05D007804 ORTHO05D009828 4.0e-15 85.9 181 40.3
VMungo0464G0276 Vigna mungo HOM05D007804 ORTHO05D009828 4.0e-15 85.9 175 38.9
Phvul.004G023300 Phaseolus vulgaris HOM05D007804 ORTHO05D009828 5.3e-15 85.5 178 42.1
FAN02G3435 Fragaria x ananassa HOM05D007804 ORTHO05D009828 6.9e-15 85.1 181 39.2
Manes.17G120501 Manihot esculenta HOM05D007804 ORTHO05D009828 6.9e-15 85.1 164 40.2
Lalb_Chr21g0319161 Lupinus albus HOM05D007804 ORTHO05D009828 4.5e-14 82.4 190 39.5
RcHm_v2.0_Chr2g0169751 Rosa chinensis HOM05D007804 ORTHO05D009828 5.8e-14 82.0 182 38.5
Medtr6g009320 Medicago truncatula HOM05D007804 ORTHO05D009828 7.6e-14 81.6 202 38.6
Aa31LG2G4650 Aethionema arabicum HOM05D007804 ORTHO05D009828 2.2e-13 80.1 211 34.6
TPR.G32605 Trifolium pratense HOM05D007804 ORTHO05D009828 2.2e-13 80.1 204 37.3
CARHR292560 Cardamine hirsuta HOM05D007804 ORTHO05D009828 3.8e-13 79.3 209 34.4
ClCG09G018550 Citrullus lanatus HOM05D007804 ORTHO05D009828 3.8e-13 79.3 191 39.3
BraA02t08592Z Brassica rapa HOM05D007804 ORTHO05D009828 8.4e-13 78.2 189 36.5
Migut.K01348 Erythranthe guttata HOM05D007804 ORTHO05D009828 8.4e-13 78.2 170 38.2
A02p35930 Brassica napus HOM05D007804 ORTHO05D009828 1.1e-12 77.8 189 36.5
CSS0004616 Camellia sinensis var. sinensis HOM05D007804 ORTHO05D009828 1.1e-12 77.8 172 40.1
AL5G18030 Arabidopsis lyrata HOM05D007804 ORTHO05D009828 1.4e-12 77.4 202 32.7
Psat1g077320 Pisum sativum HOM05D007804 ORTHO05D009828 3.2e-12 76.3 196 34.7
C02p54770 Brassica napus HOM05D007804 ORTHO05D009828 4.2e-12 75.9 202 33.2
BcaC03g17515 Brassica carinata HOM05D007804 ORTHO05D009828 5.5e-12 75.5 202 33.2
BolC2t11538H Brassica oleracea HOM05D007804 ORTHO05D009828 5.5e-12 75.5 202 33.2
CsaV3_5G037680 Cucumis sativus L. HOM05D007804 ORTHO05D009828 9.3e-12 74.7 184 38.6
Sp2g17190 Schrenkiella parvula HOM05D007804 ORTHO05D009828 9.3e-12 74.7 211 33.6
AT3G28420 Arabidopsis thaliana HOM05D007804 ORTHO05D009828 1.2e-11 74.3 209 31.6
BcaB07g30130 Brassica carinata HOM05D007804 ORTHO05D009828 1.2e-11 74.3 196 35.2
MELO3C021487.2 Cucumis melo HOM05D007804 ORTHO05D009828 1.2e-11 74.3 182 40.1
Peaxi162Scf00129g00628 Petunia axillaris HOM05D007804 ORTHO05D009828 1.6e-11 73.9 168 37.5
BcaC06g30917 Brassica carinata HOM05D007804 ORTHO05D009828 2.1e-11 73.6 182 34.1
A06p40550 Brassica napus HOM05D007804 ORTHO05D009828 2.1e-11 73.6 193 33.2
BraA06t26974Z Brassica rapa HOM05D007804 ORTHO05D009828 2.1e-11 73.6 193 33.2
Thhalv10004896m.g Eutrema salsugineum HOM05D007804 ORTHO05D009828 2.1e-11 73.6 218 34.9
Rhsim08G0063700 Rhododendron simsii HOM05D007804 ORTHO05D009828 2.7e-11 73.2 164 34.1
Nitab4.5_0002265g0080 Nicotiana tabacum HOM05D007804 ORTHO05D009828 3.5e-11 72.8 172 36.0
Lalb_Chr02g0159931 Lupinus albus HOM05D007804 ORTHO05D009828 4.6e-11 72.4 184 38.0
THA.LOC104805425 Tarenaya hassleriana HOM05D007804 ORTHO05D009828 4.6e-11 72.4 216 37.0
BolC7t44259H Brassica oleracea HOM05D000068 ORTHO05D009828 6.1e-11 72.0 202 33.7
PGSC0003DMG402001401 Solanum tuberosum HOM05D007804 ORTHO05D009828 7.9e-11 71.6 176 36.4
C07p37470 Brassica napus HOM05D000068 ORTHO05D009828 1.0e-10 71.2 193 32.1
Sopen02g032190 Solanum pennellii HOM05D007804 ORTHO05D009828 1.0e-10 71.2 163 34.4
Nitab4.5_0001239g0070 Nicotiana tabacum HOM05D007804 ORTHO05D009828 1.8e-10 70.5 177 37.9
Sed0004613 Sechium edule HOM05D007804 ORTHO05D009828 2.3e-10 70.1 172 37.8
Sed0005835 Sechium edule HOM05D007804 ORTHO05D009828 2.3e-10 70.1 172 37.8
Carub.0005s0691 Capsella rubella HOM05D007804 ORTHO05D009828 3.0e-10 69.7 181 33.1
Actinidia02723 Actinidia chinensis HOM05D007804 ORTHO05D009828 3.9e-10 69.3 167 37.1
Nn3g17058 Nelumbo nucifera HOM05D007804 ORTHO05D009828 3.9e-10 69.3 184 37.0
Solyc02g087440.4 Solanum lycopersicum HOM05D007804 ORTHO05D009828 5.1e-10 68.9 168 37.5
SGA_v2.0_scaffold135G34801 Striga asiatica HOM05D007804 ORTHO05D009828 6.7e-10 68.6 165 36.4
BcaC06g33740 Brassica carinata HOM05D007804 ORTHO05D009828 8.7e-10 68.2 181 34.3
Psat1g077160 Pisum sativum HOM05D007804 ORTHO05D009828 8.7e-10 68.2 197 36.0
unitig_899.g15501 Utricularia gibba HOM05D007804 ORTHO05D009828 1.5e-09 67.4 167 37.1
Sed0002452 Sechium edule HOM05D007804 ORTHO05D009828 2.5e-09 66.6 175 39.4
Migut.H00872 Erythranthe guttata HOM05D007804 ORTHO05D009828 5.7e-09 65.5 176 31.8
CAN.G206.83 Capsicum annuum HOM05D007804 ORTHO05D009828 1.6e-08 63.9 179 34.6
TWI36G0430 Tripterygium wilfordii HOM05D007804 ORTHO05D009828 2.2e-08 63.5 173 29.5
MSTRG.23968 Avicennia marina HOM05D007804 ORTHO05D009828 1.1e-07 61.2 175 37.1
DCAR_011178 Daucus carota HOM05D007804 ORTHO05D009828 5.3e-07 58.9 167 32.9
TAR622G0153 Trochodendron aralioides HOM05D007804 ORTHO05D009828 5.3e-07 58.9 168 31.5
Lsat_1_v5_gn_4_180340 Lactuca sativa HOM05D007804 ORTHO05D009828 6.9e-07 58.5 157 33.8
Nn4g22964 Nelumbo nucifera HOM05D007804 ORTHO05D009828 6.9e-07 58.5 151 33.8
SalBow1G7839 Salvia bowleyana HOM05D007804 ORTHO05D009828 9.0e-07 58.2 152 34.2
Hma1.2p1_0375F.1_g138910 Hydrangea macrophylla HOM05D007804 ORTHO05D009828 1.0e-05 54.7 159 30.8


User provided reference genes

Program Settings