Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 7.6e-143 510.8 311 100.0
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 2.8e-113 412.5 309 81.9
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 3.1e-112 409.1 311 82.3
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.4e-109 400.2 311 78.1
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 1.6e-108 396.7 323 74.3
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 1.8e-104 383.3 313 69.0
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.5e-103 380.2 310 77.4
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 2.6e-103 379.4 306 76.1
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 3.8e-102 375.6 313 73.5
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 6.5e-102 374.8 311 76.2
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 8.5e-102 374.4 313 68.7
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.4e-101 373.6 309 72.8
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 2.5e-101 372.9 309 79.0
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 7.2e-101 371.3 313 71.6
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 1.2e-100 370.5 313 70.0
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 1.6e-100 370.2 309 73.1
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 3.6e-100 369.0 314 68.8
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 6.1e-100 368.2 311 71.4
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.0e-99 367.5 309 69.9
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.0e-99 367.5 317 67.8
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 3.9e-99 365.5 311 66.2
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 5.1e-99 365.2 314 70.1
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 6.7e-99 364.8 315 70.2
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 1.5e-98 363.6 313 72.8
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 2.6e-98 362.8 306 72.5
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 3.3e-98 362.5 310 64.2
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 4.4e-98 362.1 315 64.8
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 9.7e-98 360.9 311 68.8
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 2.8e-97 359.4 311 69.1
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 6.3e-97 358.2 311 69.1
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.1e-96 357.5 309 63.8
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 2.4e-96 356.3 313 75.7
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.3e-96 355.1 313 75.4
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.2e-95 354.0 310 68.1
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 2.0e-95 353.2 310 72.6
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.6e-95 352.8 309 71.8
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 4.5e-95 352.1 286 80.1
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.7e-94 350.1 324 63.6
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 2.9e-94 349.4 313 67.7
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 3.8e-94 349.0 283 73.5
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 1.1e-93 347.4 325 68.0
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.1e-93 347.4 309 69.3
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 1.1e-93 347.4 310 63.5
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 1.5e-93 347.1 347 68.3
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.9e-93 346.7 313 70.9
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 4.7e-92 342.0 311 67.8
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.0e-91 340.9 310 62.6
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 2.3e-91 339.7 259 81.1
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 3.9e-91 339.0 310 70.6
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 2.0e-90 336.7 310 70.3
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 5.7e-90 335.1 312 70.2
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.3e-89 334.0 313 68.4
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 3.1e-88 329.3 291 67.0
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 7.0e-88 328.2 314 60.5
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.0e-87 326.6 314 60.2
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.0e-86 324.3 280 65.0
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 1.5e-85 320.5 323 67.2
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 9.4e-85 317.8 313 55.0
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.2e-84 317.4 310 69.0
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 2.1e-84 316.6 310 68.1
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 3.6e-84 315.8 300 64.3
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 4.7e-84 315.5 310 69.4
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.4e-83 313.9 308 61.7
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 6.8e-83 311.6 339 64.0
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 3.7e-81 305.8 171 87.7
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 3.7e-81 305.8 313 68.1
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.2e-79 300.8 300 70.0
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 2.7e-79 299.7 351 60.7
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 5.9e-79 298.5 303 62.4
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 1.7e-78 297.0 181 82.9
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 2.2e-78 296.6 304 59.5
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 3.8e-78 295.8 312 62.2
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.5e-77 293.1 309 67.0
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 9.4e-77 291.2 309 66.7
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 2.7e-76 289.7 349 60.5
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 8.0e-76 288.1 313 59.7
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 1.0e-75 287.7 309 63.4
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 1.0e-75 287.7 309 63.1
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 6.8e-75 285.0 318 63.8
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.2e-74 284.3 320 61.2
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 2.6e-74 283.1 309 54.7
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 2.8e-73 279.6 302 59.6
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 6.3e-73 278.5 313 64.2
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 8.3e-73 278.1 304 62.8
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 9.1e-72 274.6 311 61.1
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 4.5e-71 272.3 284 64.8
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 2.9e-70 269.6 283 66.4
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 4.2e-69 265.8 311 57.9
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 2.8e-68 263.1 317 64.4
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.8e-67 260.4 332 54.8
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 4.0e-67 259.2 316 59.8
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 4.0e-67 259.2 316 59.8
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 9.8e-66 254.6 310 50.6
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 9.8e-66 254.6 310 50.6
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.7e-65 252.7 189 65.1
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 2.4e-64 250.0 309 62.5
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 2.4e-64 250.0 306 62.1
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 5.4e-64 248.8 310 59.4
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 7.0e-64 248.4 312 58.3
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 3.9e-62 242.7 310 51.6
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 3.9e-62 242.7 310 51.6
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 3.9e-62 242.7 310 51.6
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 5.0e-62 242.3 313 54.6
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 1.4e-59 234.2 371 50.7
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 4.4e-58 229.2 311 52.7
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 2.9e-57 226.5 306 59.8
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 2.9e-57 226.5 180 65.6
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 7.0e-56 221.9 283 58.7
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 9.2e-56 221.5 299 58.2
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.5e-53 214.2 189 60.8
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 3.0e-46 189.9 120 75.0
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 6.2e-44 182.2 137 66.4
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.6e-42 175.3 158 58.9
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.1e-39 167.2 133 62.4
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.1e-36 157.1 163 52.8
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 3.1e-35 153.3 173 73.4
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 3.4e-34 149.8 237 43.9
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 6.6e-30 135.6 98 69.4
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 3.4e-26 123.2 66 89.4
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 1.3e-25 121.3 136 50.0
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 8.7e-22 108.6 97 61.9
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 8.7e-22 108.6 97 61.9
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 1.5e-21 107.8 94 62.8
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 1.6e-20 104.4 138 58.7
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 2.0e-18 97.4 140 50.7
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 1.1e-13 81.6 55 69.1
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 1.5e-13 81.3 55 69.1
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.6e-12 77.8 48 72.9
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 8.1e-12 75.5 57 66.7
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 6.9e-11 72.4 90 53.3
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 9.0e-11 72.0 93 64.5
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 2.5e-08 63.9 101 40.6
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.6e-07 61.2 29 93.1
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.1e-07 60.8 105 39.0
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 4.6e-07 59.7 124 35.5
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 1.0e-06 58.5 105 38.1
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 1.0e-06 58.5 50 56.0
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 1.0e-06 58.5 50 56.0
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.3e-06 58.2 114 36.8
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 2.3e-06 57.4 95 36.8
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 3.0e-06 57.0 107 36.4
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 3.9e-06 56.6 53 49.1
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 3.9e-06 56.6 76 44.7
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 3.9e-06 56.6 51 52.9
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 5.1e-06 56.2 56 48.2
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 5.1e-06 56.2 61 44.3
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 5.1e-06 56.2 61 44.3
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 5.1e-06 56.2 61 44.3
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 6.7e-06 55.8 56 48.2
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 6.7e-06 55.8 111 35.1
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 6.7e-06 55.8 60 46.7
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 6.7e-06 55.8 68 36.8
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 8.7e-06 55.5 113 32.7
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 8.7e-06 55.5 101 31.7
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 8.7e-06 55.5 77 37.7
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 8.7e-06 55.5 95 37.9
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 8.7e-06 55.5 51 51.0
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 8.7e-06 55.5 68 36.8


User provided reference genes

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