Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 1.2e-129 466.5 230 100.0
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 5.3e-77 291.6 231 63.6
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 4.5e-76 288.5 223 63.7
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.7e-75 286.6 220 64.5
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 5.0e-75 285.0 214 65.9
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 4.2e-74 282.0 248 58.9
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 1.6e-73 280.0 223 62.8
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.1e-73 279.6 220 63.2
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 3.6e-73 278.9 221 63.3
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 3.0e-72 275.8 225 61.3
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 4.0e-72 275.4 231 59.3
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.5e-71 273.5 232 58.6
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 1.5e-71 273.5 272 54.4
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 6.3e-70 268.1 230 60.9
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 1.4e-69 266.9 192 66.7
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.8e-69 266.5 223 61.0
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 2.4e-69 266.2 217 61.8
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 3.1e-69 265.8 230 56.1
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 4.1e-69 265.4 221 58.4
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 4.1e-69 265.4 224 59.8
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 4.1e-69 265.4 223 60.1
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 9.1e-69 264.2 225 60.0
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.6e-68 263.5 197 63.5
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.6e-68 263.5 210 59.0
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 2.7e-68 262.7 227 59.5
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 4.5e-68 261.9 223 57.4
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 7.7e-68 261.2 199 63.3
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 1.7e-67 260.0 223 59.6
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 2.3e-67 259.6 224 59.4
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 2.9e-67 259.2 228 59.6
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.0e-67 258.5 224 58.9
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.1e-66 257.3 222 56.8
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.5e-66 256.9 226 56.6
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 1.9e-66 256.5 222 59.9
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 2.5e-66 256.1 198 63.6
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 3.3e-66 255.8 223 58.7
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 3.3e-66 255.8 222 55.9
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 7.2e-66 254.6 215 60.0
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 7.2e-66 254.6 231 56.7
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.2e-65 253.8 224 57.6
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.1e-65 253.1 223 55.2
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.8e-65 252.7 210 60.5
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.8e-65 252.7 225 59.1
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 2.8e-65 252.7 224 58.5
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 3.6e-65 252.3 222 56.8
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 3.6e-65 252.3 208 58.2
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 4.7e-65 251.9 226 56.2
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 6.1e-65 251.5 231 57.6
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 8.0e-65 251.1 210 59.0
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.0e-64 250.8 223 58.7
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 1.0e-64 250.8 215 55.8
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.4e-64 250.4 225 58.2
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.4e-64 250.4 225 58.2
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.4e-64 250.4 227 57.3
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.8e-64 250.0 227 57.7
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 2.3e-64 249.6 227 57.3
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 3.0e-64 249.2 221 56.1
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 6.8e-64 248.1 218 56.4
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 8.9e-64 247.7 225 58.7
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.2e-63 247.3 223 56.5
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 1.5e-63 246.9 230 57.4
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.5e-63 246.9 237 53.2
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.0e-63 246.5 218 57.3
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 2.6e-63 246.1 218 56.0
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 3.4e-63 245.7 217 57.6
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 4.4e-63 245.4 217 57.6
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 4.4e-63 245.4 241 53.9
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 4.4e-63 245.4 225 57.8
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 7.5e-63 244.6 215 58.6
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 7.5e-63 244.6 222 55.0
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 9.8e-63 244.2 217 57.6
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 9.8e-63 244.2 220 55.9
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.3e-62 243.8 214 56.1
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 1.7e-62 243.4 219 57.5
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 2.2e-62 243.0 215 57.7
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 2.8e-62 242.7 228 54.8
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 2.8e-62 242.7 217 55.8
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.8e-61 240.0 225 56.9
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 1.8e-61 240.0 223 54.3
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.8e-61 240.0 214 56.1
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 2.4e-61 239.6 219 57.1
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 2.4e-61 239.6 207 58.0
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.4e-61 239.6 199 60.3
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 2.4e-61 239.6 229 55.0
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 3.1e-61 239.2 223 54.7
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 5.4e-61 238.4 209 56.0
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 7.0e-61 238.0 219 56.6
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 9.2e-61 237.7 219 56.6
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 9.2e-61 237.7 231 53.7
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 2.0e-60 236.5 223 55.2
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 5.9e-60 235.0 201 57.7
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.3e-59 233.8 206 56.8
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 1.7e-59 233.4 218 53.2
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 1.7e-59 233.4 221 53.4
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 5.0e-59 231.9 231 54.1
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 5.0e-59 231.9 224 53.6
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 6.6e-59 231.5 231 54.1
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 6.6e-59 231.5 212 53.3
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 6.6e-59 231.5 210 56.7
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 1.1e-58 230.7 227 54.2
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 2.5e-58 229.6 222 50.5
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 3.3e-58 229.2 219 53.9
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 5.6e-58 228.4 202 55.4
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 7.3e-58 228.0 218 51.8
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.2e-57 227.3 247 51.0
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.6e-57 226.9 229 52.4
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.6e-57 226.9 231 54.1
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 2.8e-57 226.1 216 53.7
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 6.1e-57 224.9 223 51.1
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.8e-56 223.4 210 54.3
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.8e-56 223.4 230 52.6
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 5.2e-56 221.9 219 53.0
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 6.8e-56 221.5 247 50.2
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 8.9e-56 221.1 217 50.7
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.5e-55 220.3 221 48.0
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 5.8e-55 218.4 227 50.7
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 9.8e-55 217.6 229 50.7
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.3e-54 217.2 190 58.4
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 4.9e-54 215.3 268 44.0
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 1.6e-52 210.3 185 57.3
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 4.6e-52 208.8 197 53.3
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 6.0e-52 208.4 233 48.9
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 7.8e-52 208.0 198 52.0
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 1.0e-51 207.6 196 50.5
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.3e-51 207.2 223 50.2
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 1.7e-51 206.8 223 50.2
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.9e-51 205.7 209 48.3
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 1.5e-50 203.8 163 59.5
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 4.3e-50 202.2 222 48.6
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 9.8e-47 191.0 134 66.4
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 1.7e-46 190.3 218 45.0
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.9e-46 188.7 215 46.5
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 6.4e-46 188.3 198 50.0
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 4.1e-45 185.7 217 44.7
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 9.2e-45 184.5 216 47.2
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 2.7e-44 183.0 207 44.4
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 7.8e-44 181.4 216 46.8
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.0e-43 179.5 216 43.1
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 3.0e-43 179.5 191 48.7
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 6.6e-43 178.3 206 46.1
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-42 177.6 218 42.2
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.5e-42 177.2 223 44.8
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.5e-42 177.2 223 44.8
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 5.6e-42 175.3 209 44.0
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.2e-41 174.1 206 43.2
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 1.6e-41 173.7 209 43.5
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 2.1e-41 173.3 209 46.9
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 2.1e-41 173.3 142 59.9
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.2e-39 167.5 185 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 5.8e-39 165.2 207 41.5
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.7e-36 156.4 187 42.8
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 7.8e-36 154.8 160 51.2
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.1e-34 151.0 143 50.3
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 2.4e-32 143.3 144 51.4
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.0e-32 142.5 143 49.0
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 3.9e-27 125.9 142 45.8
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 2.5e-26 123.2 206 35.9
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 2.1e-25 120.2 207 36.2
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.6e-23 113.2 181 38.1
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 7.6e-23 111.7 144 42.4
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.2e-22 110.2 144 41.7
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.9e-22 109.8 256 30.9
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.9e-18 97.1 107 45.8
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 9.6e-18 94.7 86 53.5
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.7e-14 84.0 68 60.3
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 1.9e-13 80.5 68 55.9
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.2e-13 79.7 62 53.2
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.2e-13 79.3 159 33.3
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.7e-12 76.6 62 61.3
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 1.0e-11 74.7 58 58.6
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 3.9e-11 72.8 58 55.2
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 7.4e-10 68.6 58 53.4
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.3e-08 62.4 56 50.0
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 3.4e-07 59.7 69 49.3
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.3e-06 57.8 69 49.3
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.2e-06 57.0 69 43.5
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 2.2e-06 57.0 70 40.0
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 4.9e-06 55.8 114 33.3
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 6.4e-06 55.5 70 44.3
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 8.4e-06 55.1 70 38.6
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 8.4e-06 55.1 69 39.1
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 8.4e-06 55.1 69 40.6
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 8.4e-06 55.1 69 46.4


User provided reference genes

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