Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 4.0e-120 434.9 233 100.0
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 9.6e-58 227.6 225 58.2
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 1.2e-55 220.7 220 57.3
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 1.3e-54 217.2 222 55.9
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 2.4e-53 213.0 222 57.2
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 4.2e-53 212.2 225 54.7
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 1.2e-47 194.1 224 51.3
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 2.2e-46 189.9 223 51.1
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 5.5e-45 185.3 225 50.7
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 7.1e-45 184.9 225 52.0
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 1.6e-44 183.7 224 50.0
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 2.1e-44 183.3 228 49.6
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 1.3e-43 180.6 222 48.2
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 2.5e-42 176.4 231 45.9
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 2.8e-41 172.9 224 49.6
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 6.3e-41 171.8 226 49.6
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 1.4e-40 170.6 223 48.9
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.8e-40 170.2 225 48.4
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 4.1e-40 169.1 263 43.3
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 8.5e-38 161.4 225 47.1
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 1.4e-37 160.6 223 45.3
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 4.6e-36 155.6 221 43.9
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 7.9e-36 154.8 236 42.8
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 3.0e-35 152.9 226 46.0
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 2.5e-34 149.8 222 45.0
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 2.5e-34 149.8 223 43.5
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 2.5e-34 149.8 225 41.3
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 3.3e-34 149.4 225 40.9
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 4.3e-34 149.1 224 42.9
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 9.7e-34 147.9 228 44.7
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 4.8e-33 145.6 224 43.8
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 8.2e-33 144.8 224 43.8
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 2.4e-32 143.3 230 41.7
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 5.3e-32 142.1 224 42.4
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 9.1e-32 141.4 224 42.0
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 1.0e-30 137.9 225 42.2
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 1.0e-30 137.9 121 59.5
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 1.3e-30 137.5 222 41.9
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 5.0e-30 135.6 228 40.4
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 8.5e-30 134.8 187 44.9
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 1.1e-29 134.4 222 42.8
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 2.1e-28 130.2 224 42.0
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 2.7e-28 129.8 226 39.8
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 6.1e-28 128.6 121 61.2
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 6.1e-28 128.6 228 39.9
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 7.9e-28 128.3 220 40.0
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 7.9e-28 128.3 224 41.5
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 2.3e-27 126.7 229 38.9
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 2.3e-27 126.7 229 38.9
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 6.7e-27 125.2 225 39.1
Aa31LG2G4670 Aethionema arabicum HOM05D007214 ORTHO05D008907 8.8e-27 124.8 229 39.7
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 2.6e-26 123.2 222 40.5
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 1.7e-25 120.6 223 35.4
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 2.2e-25 120.2 228 39.0
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 4.8e-25 119.0 145 49.0
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 8.2e-25 118.2 225 39.1
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 8.2e-25 118.2 154 48.1
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 8.2e-25 118.2 239 37.7
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 9.1e-24 114.8 201 38.3
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 1.5e-23 114.0 225 38.7
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 5.9e-23 112.1 232 40.5
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 7.7e-23 111.7 231 35.1
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 1.1e-21 107.8 97 57.7
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 2.5e-21 106.7 225 37.3
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 3.2e-21 106.3 223 35.9
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 5.5e-21 105.5 192 40.6
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 9.4e-21 104.8 192 38.0
TPR.G39121 Trifolium pratense HOM05D007214 ORTHO05D008907 2.7e-20 103.2 242 34.7
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 3.6e-20 102.8 263 32.7
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 3.6e-20 102.8 128 46.9
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 4.7e-20 102.4 232 36.2
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 1.0e-19 101.3 108 55.6
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 1.4e-19 100.9 214 39.3
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 3.0e-19 99.8 222 33.8
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 3.9e-19 99.4 228 36.0
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 6.7e-19 98.6 222 36.0
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 2.6e-18 96.7 205 36.1
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 2.6e-18 96.7 105 51.4
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 1.3e-17 94.4 226 33.2
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 1.3e-17 94.4 215 37.2
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 3.7e-17 92.8 227 33.5
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 3.7e-17 92.8 124 47.6
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 8.2e-17 91.7 86 55.8
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 1.8e-16 90.5 228 32.5
MELO3C030968.2 Cucumis melo HOM05D007214 ORTHO05D008907 3.1e-16 89.7 93 51.6
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 4.1e-16 89.4 232 32.3
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 1.0e-14 84.7 206 32.0
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 1.3e-14 84.3 164 36.0
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 1.5e-13 80.9 205 32.2
CDE02G1584 Ceratophyllum demersum HOM05D007214 ORTHO05D008907 5.5e-13 79.0 105 39.0
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 5.5e-13 79.0 226 31.0
Sabra17G0063300 Salix brachista HOM05D007214 ORTHO05D008907 2.7e-12 76.6 80 56.2
FAN05G0748 Fragaria x ananassa HOM05D007214 ORTHO05D008907 4.7e-12 75.9 110 45.5
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 8.0e-12 75.1 213 31.0
BraA06t26977Z Brassica rapa HOM05D007214 ORTHO05D008907 4.0e-11 72.8 231 30.7
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 6.7e-11 72.0 102 43.1
CsaV3_3G041890 Cucumis sativus L. HOM05D062301 ORTHO05D008907 1.5e-10 70.9 214 28.5
TPR.G39060 Trifolium pratense HOM05D007214 ORTHO05D008907 3.3e-10 69.7 147 34.7
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 1.8e-08 63.9 219 34.2
Os06g0235900 Oryza sativa ssp. japonica HOM05D007214 ORTHO05D008907 5.3e-08 62.4 101 39.6
MSTRG.23970 Avicennia marina HOM05D007214 ORTHO05D008907 3.5e-07 59.7 46 67.4
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 5.9e-07 58.9 90 41.1
PGSC0003DMG400001300 Solanum tuberosum HOM05D007214 ORTHO05D008907 5.9e-07 58.9 112 37.5
HanXRQChr09g0265731 Helianthus annuus HOM05D007214 ORTHO05D008907 1.3e-06 57.8 236 27.5
Hund13295 Selenicereus undatus HOM05D007214 ORTHO05D008907 5.0e-06 55.8 146 34.2
MD17G1043300 Malus domestica HOM05D007214 ORTHO05D008907 6.5e-06 55.5 53 54.7
unitig_746.g26578 Utricularia gibba HOM05D007214 ORTHO05D008907 8.5e-06 55.1 48 60.4


User provided reference genes

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