Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012507m.g Citrus clementina HOM05D007534 ORTHO05D009540 3.0e-148 528.5 262 100.0
Atru.chr8.1788 Acer truncatum HOM05D007534 ORTHO05D009540 2.2e-90 336.3 269 69.9
Thecc.05G068400 Theobroma cacao HOM05D007534 ORTHO05D009540 2.8e-90 335.9 267 68.5
Manes.09G065300 Manihot esculenta HOM05D007534 ORTHO05D009540 5.9e-88 328.2 261 68.2
Duzib093G0985 Durio zibethinus HOM05D007534 ORTHO05D009540 1.0e-87 327.4 266 67.7
Gohir.D01G204300 Gossypium hirsutum HOM05D007534 ORTHO05D009540 3.8e-87 325.5 240 70.4
TWI53G0173 Tripterygium wilfordii HOM05D007534 ORTHO05D009540 6.5e-87 324.7 266 68.8
Cpa.g.sc102.24 Carica papaya HOM05D007534 ORTHO05D009540 4.2e-86 322.0 255 69.4
vmacro08785 Vaccinium macrocarpon HOM05D007534 ORTHO05D009540 7.2e-86 321.2 245 69.8
Gorai.002G246500 Gossypium raimondii HOM05D007534 ORTHO05D009540 9.4e-86 320.9 241 70.1
Dinv37321 Davidia involucrata HOM05D001037 ORTHO05D000888 1.2e-85 320.5 229 73.4
Sabra16G0099100 Salix brachista HOM05D007534 ORTHO05D009540 1.2e-85 320.5 265 65.7
Gohir.A01G213100 Gossypium hirsutum HOM05D007534 ORTHO05D009540 6.1e-85 318.2 257 66.9
TAR369G0058 Trochodendron aralioides HOM05D007534 ORTHO05D009540 2.3e-84 316.2 251 67.7
Potri.016G098900 Populus trichocarpa HOM05D007534 ORTHO05D009540 3.9e-84 315.5 268 65.7
CAN.G900.25 Capsicum annuum HOM05D007534 ORTHO05D009540 5.1e-84 315.1 215 74.4
QL07p043071 Quercus lobata HOM05D007534 ORTHO05D009540 5.7e-83 311.6 223 71.7
MSTRG.19184 Avicennia marina HOM05D007534 ORTHO05D009540 9.7e-83 310.8 221 72.9
ClCG04G009370 Citrullus lanatus HOM05D007534 ORTHO05D009540 9.7e-83 310.8 184 81.5
GSVIVG01033650001 Vitis vinifera HOM05D007534 ORTHO05D009540 1.3e-82 310.5 183 82.5
PGSC0003DMG400003865 Solanum tuberosum HOM05D007534 ORTHO05D009540 3.7e-82 308.9 191 80.1
Eucgr.A01668 Eucalyptus grandis HOM05D007534 ORTHO05D009540 4.8e-82 308.5 247 68.4
COL.COLO4_26947 Corchorus olitorius HOM05D007534 ORTHO05D009540 8.2e-82 307.8 247 69.6
Oeu005026.1 Olea europaea HOM05D007534 ORTHO05D009540 8.2e-82 307.8 240 68.3
Sopen09g003090 Solanum pennellii HOM05D007534 ORTHO05D009540 1.4e-81 307.0 178 83.7
THA.LOC104807064 Tarenaya hassleriana HOM05D007534 ORTHO05D009540 2.4e-81 306.2 228 71.1
CANSAT80G0853 Cannabis sativa HOM05D007534 ORTHO05D009540 3.1e-81 305.8 265 63.0
arahy.Tifrunner.gnm1.ann1.39JB5J Arachis hypogaea HOM05D007534 ORTHO05D009540 1.2e-80 303.9 230 69.6
arahy.Tifrunner.gnm1.ann1.C885SU Arachis hypogaea HOM05D007534 ORTHO05D009540 1.2e-80 303.9 230 69.6
Solyc09g008270.3 Solanum lycopersicum HOM05D007534 ORTHO05D009540 1.2e-80 303.9 265 62.6
SalBow3G3627 Salvia bowleyana HOM05D007534 ORTHO05D009540 2.6e-80 302.8 227 70.9
Sc20g0005570 Simmondsia chinensis HOM05D007534 ORTHO05D009540 4.5e-80 302.0 194 77.8
CsaV3_6G039950 Cucumis sativus L. HOM05D007534 ORTHO05D009540 5.9e-80 301.6 189 78.8
Nn2g13809 Nelumbo nucifera HOM05D007534 ORTHO05D009540 1.0e-79 300.8 228 71.5
CiPaw.10G129000 Carya illinoinensis HOM05D007534 ORTHO05D009540 1.3e-79 300.4 206 72.8
Actinidia32489 Actinidia chinensis HOM05D007534 ORTHO05D009540 2.2e-79 299.7 197 75.1
MELO3C024472.2 Cucumis melo HOM05D007534 ORTHO05D009540 3.8e-79 298.9 192 78.6
Aqoxy1G01139 Aquilegia oxysepala HOM05D007534 ORTHO05D009540 1.4e-78 297.0 273 61.5
Sed0017969 Sechium edule HOM05D007534 ORTHO05D009540 1.9e-78 296.6 179 80.4
Prupe.7G128600 Prunus persica HOM05D007534 ORTHO05D009540 3.2e-78 295.8 242 64.5
Cc06_g04320 Coffea canephora HOM05D007534 ORTHO05D009540 2.1e-77 293.1 244 64.3
HanXRQChr13g0400981 Helianthus annuus HOM05D007534 ORTHO05D009540 2.1e-77 293.1 250 64.0
Lj2A120T45 Lonicera japonica HOM05D007534 ORTHO05D009540 2.1e-77 293.1 193 76.7
AUR62042063 Chenopodium quinoa HOM05D007534 ORTHO05D009540 2.7e-77 292.7 273 59.7
Migut.J00648 Erythranthe guttata HOM05D007534 ORTHO05D009540 6.1e-77 291.6 209 71.8
SGA_v2.0_scaffold75G24837 Striga asiatica HOM05D007534 ORTHO05D009540 1.0e-76 290.8 213 70.9
BraA05t19860Z Brassica rapa HOM05D007534 ORTHO05D009540 2.3e-76 289.7 190 75.3
Haze_20525 Corylus avellana HOM05D007534 ORTHO05D009540 3.0e-76 289.3 278 59.0
A05p08980 Brassica napus HOM05D007534 ORTHO05D009540 6.7e-76 288.1 179 78.8
BcaC02g11812 Brassica carinata HOM05D007534 ORTHO05D009540 1.1e-75 287.3 189 74.6
BolC4t22757H Brassica oleracea HOM05D007534 ORTHO05D009540 4.4e-75 285.4 189 75.1
C04p11090 Brassica napus HOM05D007534 ORTHO05D009540 5.7e-75 285.0 189 74.6
Ca_28252_v3 Cicer arietinum L. HOM05D007534 ORTHO05D009540 1.3e-74 283.9 189 76.2
Nitab4.5_0000578g0110 Nicotiana tabacum HOM05D007534 ORTHO05D009540 1.3e-74 283.9 267 61.0
Rhsim04G0144000 Rhododendron simsii HOM05D007534 ORTHO05D009540 1.3e-74 283.9 298 56.4
BcaB02g09324 Brassica carinata HOM05D007534 ORTHO05D009540 2.2e-74 283.1 249 61.0
RcHm_v2.0_Chr3g0470401 Rosa chinensis HOM05D007534 ORTHO05D009540 2.2e-74 283.1 265 60.0
Medtr1g063070 Medicago truncatula HOM05D007534 ORTHO05D009540 2.8e-74 282.7 193 74.1
Carub.0004s1873 Capsella rubella HOM05D007534 ORTHO05D009540 3.7e-74 282.3 190 73.7
Lsat_1_v5_gn_6_24941 Lactuca sativa HOM05D007534 ORTHO05D009540 3.7e-74 282.3 265 59.2
Lj5g0014413 Lotus japonicus HOM05D007534 ORTHO05D009540 6.3e-74 281.6 210 69.5
Lalb_Chr06g0171761 Lupinus albus HOM05D007534 ORTHO05D009540 6.3e-74 281.6 267 61.4
Phvul.007G147900 Phaseolus vulgaris HOM05D007534 ORTHO05D009540 1.4e-73 280.4 176 79.0
Cfa017628 Carpinus fangiana HOM05D007534 ORTHO05D009540 3.1e-73 279.3 189 75.1
Glyma.13G141700 Glycine max HOM05D007534 ORTHO05D009540 3.1e-73 279.3 246 63.0
Zm00001eb003080 Zea mays HOM05D007534 ORTHO05D009540 3.1e-73 279.3 184 73.9
AT2G36885 Arabidopsis thaliana HOM05D007534 ORTHO05D009540 4.1e-73 278.9 197 70.6
Psat6g074600 Pisum sativum HOM05D007534 ORTHO05D009540 7.0e-73 278.1 195 72.8
AL4G33100 Arabidopsis lyrata HOM05D007534 ORTHO05D009540 2.0e-72 276.6 179 75.4
Os03g0137600 Oryza sativa ssp. japonica HOM05D007534 ORTHO05D009540 1.0e-71 274.2 177 75.7
PSO266G0073 Papaver somniferum HOM05D007534 ORTHO05D009540 1.3e-71 273.9 242 61.6
Hma1.2p1_0205F.1_g086900 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 2.9e-71 272.7 207 68.1
CARHR131340 Cardamine hirsuta HOM05D007534 ORTHO05D009540 3.8e-71 272.3 249 59.8
ECA233G2496 Erigeron canadensis HOM05D007534 ORTHO05D009540 6.5e-71 271.6 178 73.6
Aa31LG5G22110 Aethionema arabicum HOM05D007534 ORTHO05D009540 1.1e-70 270.8 248 59.7
CDE09G0108 Ceratophyllum demersum HOM05D007534 ORTHO05D009540 1.6e-69 266.9 192 71.9
Thhalv10017130m.g Eutrema salsugineum HOM05D007534 ORTHO05D009540 3.6e-69 265.8 197 70.1
ATR0723G005 Amborella trichopoda HOM05D007534 ORTHO05D009540 6.1e-69 265.0 195 68.2
Sp4g19170 Schrenkiella parvula HOM05D007534 ORTHO05D009540 1.3e-66 257.3 189 68.8
MD12G1110000 Malus domestica HOM05D007534 ORTHO05D009540 3.5e-64 249.2 277 54.9
Peaxi162Scf00847g00032 Petunia axillaris HOM05D007534 ORTHO05D009540 5.9e-64 248.4 206 64.1
CSS0046236 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D009540 7.7e-64 248.1 210 66.7
Nitab4.5_0008624g0030 Nicotiana tabacum HOM05D007534 ORTHO05D009540 2.2e-63 246.5 268 53.7
Ah.15g092560 Amaranthus hybridus HOM05D007534 ORTHO05D009540 6.5e-63 245.0 228 57.5
PGR004G0787 Punica granatum HOM05D007534 ORTHO05D009540 5.2e-60 235.3 147 78.2
Pp3c2_17450 Physcomitrium patens HOM05D007534 ORTHO05D009540 4.4e-59 232.3 180 63.9
EL10Ac7g16645 Beta vulgaris HOM05D007534 ORTHO05D009540 1.1e-57 227.6 258 50.8
Hma1.2p1_0828F.1_g225100 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 2.4e-57 226.5 128 84.4
AagrBONN_evm.TU.Sc2ySwM_117.1862 Anthoceros agrestis HOM05D007534 ORTHO05D009540 1.6e-56 223.8 208 59.1
Mapoly0049s0045 Marchantia polymorpha HOM05D007534 ORTHO05D009540 2.0e-56 223.4 176 62.5
QL03p002371 Quercus lobata HOM05D007534 ORTHO05D009540 3.6e-53 212.6 177 63.8
unitig_22.g5100 Utricularia gibba HOM05D007534 ORTHO05D009540 2.3e-52 209.9 191 60.7
TPR.G11259 Trifolium pratense HOM05D007534 ORTHO05D009540 1.1e-49 201.1 123 82.1
FAN15G1333 Fragaria x ananassa HOM05D007534 ORTHO05D009540 1.4e-44 184.1 99 85.9
AUR62026915 Chenopodium quinoa HOM05D007534 ORTHO05D009540 5.8e-43 178.7 193 52.8
Cre02.g143450 Chlamydomonas reinhardtii HOM05D007534 ORTHO05D009540 3.6e-37 159.5 185 50.3
CSS0001990 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D012079 1.1e-30 137.9 75 86.7
ATR0680G419 Amborella trichopoda HOM05D007534 ORTHO05D009540 1.5e-27 127.5 65 90.8
MD04G1092000 Malus domestica HOM05D007534 ORTHO05D009540 1.9e-25 120.6 129 55.0
Rhsim04G0142700 Rhododendron simsii HOM05D007534 ORTHO05D009540 4.0e-20 102.8 58 86.2
MD04G1092200 Malus domestica HOM05D007534 ORTHO05D009540 6.9e-12 75.5 99 45.5


User provided reference genes

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