Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 8.2e-130 467.2 265 100.0
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 4.1e-89 332.0 262 76.0
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 8.9e-84 314.3 267 71.2
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 8.3e-82 307.8 252 70.6
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 1.4e-81 307.0 252 70.6
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 1.4e-81 307.0 267 66.7
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 2.4e-81 306.2 267 71.5
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 4.1e-81 305.4 267 71.2
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 7.0e-81 304.7 264 69.3
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 9.2e-81 304.3 249 71.5
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 9.2e-81 304.3 247 70.9
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 3.5e-80 302.4 252 72.6
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 4.6e-80 302.0 249 70.3
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 4.6e-80 302.0 267 70.0
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.0e-79 300.8 250 70.8
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 1.3e-79 300.4 268 69.4
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 1.3e-79 300.4 256 66.4
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 3.0e-79 299.3 250 70.8
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 5.0e-79 298.5 266 66.5
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 6.6e-79 298.1 253 72.7
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 1.1e-78 297.4 267 62.9
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 1.9e-78 296.6 249 68.3
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.9e-78 296.6 249 70.3
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 2.5e-78 296.2 251 70.9
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 5.6e-78 295.0 249 68.7
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 9.5e-78 294.3 251 69.7
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 1.2e-77 293.9 268 67.2
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 1.8e-76 290.0 267 64.8
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 3.1e-76 289.3 249 66.3
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 6.8e-76 288.1 266 66.2
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.0e-75 286.6 261 59.8
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 5.8e-75 285.0 242 66.1
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 8.3e-74 281.2 254 67.7
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 1.1e-73 280.8 256 66.8
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 1.1e-73 280.8 256 67.2
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 1.1e-73 280.8 255 65.9
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 2.4e-73 279.6 268 64.2
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 3.2e-73 279.3 256 66.0
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 2.1e-72 276.6 267 63.3
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 7.8e-72 274.6 249 66.3
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 7.8e-72 274.6 249 67.5
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 1.0e-71 274.2 249 66.7
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.7e-71 273.5 261 62.8
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 2.3e-71 273.1 255 66.3
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 3.9e-71 272.3 255 65.9
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 3.9e-71 272.3 255 65.9
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 5.1e-71 271.9 250 66.8
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 6.6e-71 271.6 276 59.4
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 4.3e-70 268.9 253 66.0
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.3e-70 268.9 248 66.1
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 5.6e-70 268.5 254 64.2
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 5.6e-70 268.5 248 63.7
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 1.6e-69 266.9 251 63.7
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 2.8e-69 266.2 245 65.3
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 3.6e-69 265.8 247 64.4
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 6.2e-69 265.0 246 63.0
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 1.1e-68 264.2 259 62.5
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 3.1e-68 262.7 261 60.5
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 4.0e-68 262.3 251 64.9
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 4.0e-68 262.3 267 60.3
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 5.2e-68 261.9 251 64.9
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 8.9e-68 261.2 253 64.4
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 1.3e-66 257.3 268 61.2
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 3.7e-66 255.8 254 63.8
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 4.9e-66 255.4 263 64.3
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.9e-65 253.4 261 59.0
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 3.2e-65 252.7 271 59.8
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 7.1e-65 251.5 254 62.2
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 2.7e-64 249.6 213 68.1
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 6.0e-64 248.4 236 67.8
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 3.0e-63 246.1 278 59.0
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 6.6e-63 245.0 205 69.3
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 3.3e-62 242.7 280 56.1
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 2.1e-61 240.0 250 59.2
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 2.8e-61 239.6 249 63.5
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 1.4e-60 237.3 269 56.1
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 4.4e-59 232.3 247 58.7
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 2.2e-58 229.9 245 62.0
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 8.4e-58 228.0 250 58.0
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 2.1e-56 223.4 248 58.5
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 3.5e-56 222.6 207 65.2
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 4.6e-56 222.2 246 60.6
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 7.8e-56 221.5 206 61.2
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 6.6e-55 218.4 247 58.7
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 3.3e-54 216.1 251 55.8
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 3.3e-54 216.1 249 54.6
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 5.6e-54 215.3 249 56.6
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 1.3e-53 214.2 221 61.1
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 6.2e-53 211.8 250 54.8
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 6.2e-53 211.8 250 56.4
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 2.4e-52 209.9 205 61.5
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 6.9e-52 208.4 231 57.6
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 9.9e-51 204.5 255 52.9
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 3.8e-50 202.6 246 52.0
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 6.4e-50 201.8 252 54.4
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 6.6e-47 191.8 269 47.6
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 6.2e-45 185.3 155 65.8
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 1.1e-44 184.5 249 43.4
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.5e-43 180.6 154 64.9
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 3.4e-43 179.5 191 53.4
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 1.8e-39 167.2 255 40.0
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 5.1e-39 165.6 150 56.7
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 7.4e-38 161.8 250 49.6
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 1.1e-36 157.9 261 41.0
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.8e-36 157.1 160 60.6
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 7.6e-35 151.8 273 44.0
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.5e-32 142.9 139 60.4
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.1e-28 131.3 118 67.8
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.1e-28 131.3 118 67.8
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 4.5e-27 125.9 251 35.9
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 1.3e-21 107.8 162 40.7
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 1.8e-20 104.0 250 38.0
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 5.3e-20 102.4 212 38.7
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 9.4e-17 91.7 333 29.1
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 1.0e-15 88.2 94 56.4
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 8.8e-15 85.1 167 36.5
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 9.1e-12 75.1 45 73.3
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 1.9e-09 67.4 57 59.6
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 1.6e-08 64.3 125 37.6
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 6.1e-08 62.4 111 37.8


User provided reference genes

Program Settings