Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012473m.g Citrus clementina HOM05D005959 ORTHO05D007263 2.2e-138 495.7 268 100.0
Potri.016G082100 Populus trichocarpa HOM05D005959 ORTHO05D007263 6.8e-124 447.6 268 88.8
Duzib106G1538 Durio zibethinus HOM05D005959 ORTHO05D007263 1.5e-123 446.4 265 89.1
Manes.08G000700 Manihot esculenta HOM05D005959 ORTHO05D007263 3.4e-123 445.3 265 89.1
Atru.chr8.2507 Acer truncatum HOM05D005959 ORTHO05D007263 4.4e-123 444.9 265 87.5
Thecc.05G049500 Theobroma cacao HOM05D005959 ORTHO05D007263 1.3e-122 443.4 265 87.5
Cfa017467 Carpinus fangiana HOM05D005959 ORTHO05D007263 4.9e-122 441.4 265 87.9
Potri.006G215700 Populus trichocarpa HOM05D005959 ORTHO05D007263 4.9e-122 441.4 268 86.6
TWI74G1319 Tripterygium wilfordii HOM05D005959 ORTHO05D007263 4.9e-122 441.4 265 88.3
Duzib128G1635 Durio zibethinus HOM05D005959 ORTHO05D007263 1.4e-121 439.9 266 88.3
Gohir.D04G117100 Gossypium hirsutum HOM05D005959 ORTHO05D007263 1.9e-121 439.5 266 86.8
Rhsim05G0184400 Rhododendron simsii HOM05D005959 ORTHO05D007263 1.9e-121 439.5 265 87.2
TAR623G1105 Trochodendron aralioides HOM05D005959 ORTHO05D007263 2.4e-121 439.1 265 89.1
Gorai.009G422000 Gossypium raimondii HOM05D005959 ORTHO05D007263 3.2e-121 438.7 266 86.8
Glyma.10G047100 Glycine max HOM05D005959 ORTHO05D007263 5.4e-121 438.0 260 87.3
Prupe.6G245600 Prunus persica HOM05D005959 ORTHO05D007263 9.2e-121 437.2 268 85.4
Hma1.2p1_0111F.1_g053440 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 1.6e-120 436.4 265 86.8
RcHm_v2.0_Chr3g0468051 Rosa chinensis HOM05D005959 ORTHO05D007263 2.0e-120 436.0 268 84.7
Haze_20691 Corylus avellana HOM05D005959 ORTHO05D007263 2.7e-120 435.6 279 84.2
FAN02G2849 Fragaria x ananassa HOM05D005959 ORTHO05D007263 4.6e-120 434.9 268 83.6
FAN09G4388 Fragaria x ananassa HOM05D005959 ORTHO05D007263 4.6e-120 434.9 265 84.5
FAN14G3394 Fragaria x ananassa HOM05D005959 ORTHO05D007263 6.0e-120 434.5 268 83.2
Duzib093G0581 Durio zibethinus HOM05D005959 ORTHO05D007263 1.7e-119 433.0 265 86.0
FAN05G1034 Fragaria x ananassa HOM05D005959 ORTHO05D007263 2.3e-119 432.6 265 84.2
QL07p045958 Quercus lobata HOM05D005959 ORTHO05D007263 3.9e-119 431.8 264 86.4
Lj3A975G71 Lonicera japonica HOM05D005959 ORTHO05D007263 5.0e-119 431.4 265 85.3
Peaxi162Scf00009g00079 Petunia axillaris HOM05D005959 ORTHO05D007263 8.6e-119 430.6 265 85.7
MD04G1110300 Malus domestica HOM05D005959 ORTHO05D007263 1.1e-118 430.3 268 83.6
MSTRG.26742 Avicennia marina HOM05D005959 ORTHO05D007263 1.9e-118 429.5 265 85.3
Migut.L01643 Erythranthe guttata HOM05D005959 ORTHO05D007263 1.9e-118 429.5 265 85.7
Cc06_g03270 Coffea canephora HOM05D005959 ORTHO05D007263 2.5e-118 429.1 265 85.7
Oeu026074.1 Olea europaea HOM05D005959 ORTHO05D007263 4.3e-118 428.3 265 84.2
Thhalv10017068m.g Eutrema salsugineum HOM05D005959 ORTHO05D007263 5.6e-118 427.9 262 85.1
Nitab4.5_0000725g0200 Nicotiana tabacum HOM05D005959 ORTHO05D007263 7.3e-118 427.6 265 84.5
PGSC0003DMG400017610 Solanum tuberosum HOM05D005959 ORTHO05D007263 1.2e-117 426.8 265 85.3
Ca_08807_v3 Cicer arietinum L. HOM05D005959 ORTHO05D007263 2.8e-117 425.6 263 84.4
Carub.0004s1924 Capsella rubella HOM05D005959 ORTHO05D007263 3.6e-117 425.2 264 84.5
Aqoxy2G00899 Aquilegia oxysepala HOM05D005959 ORTHO05D007263 4.7e-117 424.9 259 86.5
MD12G1131100 Malus domestica HOM05D005959 ORTHO05D007263 6.2e-117 424.5 268 82.1
ATR0594G178 Amborella trichopoda HOM05D005959 ORTHO05D007263 8.0e-117 424.1 261 86.2
Hund12071 Selenicereus undatus HOM05D005959 ORTHO05D007263 8.0e-117 424.1 266 83.8
Solyc10g085950.2 Solanum lycopersicum HOM05D005959 ORTHO05D007263 8.0e-117 424.1 265 84.2
DCAR_020866 Daucus carota HOM05D005959 ORTHO05D007263 1.1e-116 423.7 265 83.8
Lalb_Chr25g0289351 Lupinus albus HOM05D005959 ORTHO05D007263 2.3e-116 422.5 265 81.9
Psat0s1952g0120 Pisum sativum HOM05D005959 ORTHO05D007263 2.3e-116 422.5 264 82.6
Sabra16G0089800 Salix brachista HOM05D005959 ORTHO05D007263 2.3e-116 422.5 268 85.1
unitig_578.g16043 Utricularia gibba HOM05D005959 ORTHO05D007263 3.1e-116 422.2 265 84.2
PGR004G1166 Punica granatum HOM05D005959 ORTHO05D007263 4.0e-116 421.8 261 85.1
BraA04t18329Z Brassica rapa HOM05D005959 ORTHO05D007263 5.2e-116 421.4 258 84.5
Glyma.03G175800 Glycine max HOM05D005959 ORTHO05D007263 6.8e-116 421.0 260 83.5
A04p28510 Brassica napus HOM05D005959 ORTHO05D007263 8.9e-116 420.6 258 84.5
CARHR132260 Cardamine hirsuta HOM05D005959 ORTHO05D007263 8.9e-116 420.6 264 83.0
C04p65830 Brassica napus HOM05D005959 ORTHO05D007263 1.2e-115 420.2 258 84.5
Lj1g0020453 Lotus japonicus HOM05D005959 ORTHO05D007263 1.2e-115 420.2 260 83.1
EL10Ac7g17275 Beta vulgaris HOM05D005959 ORTHO05D007263 1.5e-115 419.9 261 85.8
arahy.Tifrunner.gnm1.ann1.R87Y2D Arachis hypogaea HOM05D005959 ORTHO05D007263 2.0e-115 419.5 261 83.5
Phvul.001G172900 Phaseolus vulgaris HOM05D005959 ORTHO05D007263 2.0e-115 419.5 262 82.1
AL4G33710 Arabidopsis lyrata HOM05D005959 ORTHO05D007263 2.6e-115 419.1 264 82.2
arahy.Tifrunner.gnm1.ann1.T45XFJ Arachis hypogaea HOM05D005959 ORTHO05D007263 3.4e-115 418.7 261 83.1
AT2G37330 Arabidopsis thaliana HOM05D005959 ORTHO05D007263 4.4e-115 418.3 264 82.2
CDE07G0433 Ceratophyllum demersum HOM05D005959 ORTHO05D007263 5.8e-115 417.9 271 80.8
FvH4_6g14820 Fragaria vesca HOM05D005959 ORTHO05D007263 5.8e-115 417.9 255 84.7
Medtr7g100160 Medicago truncatula HOM05D005959 ORTHO05D007263 5.8e-115 417.9 263 82.5
TPR.G21452 Trifolium pratense HOM05D005959 ORTHO05D007263 5.8e-115 417.9 263 82.5
BcaC02g07517 Brassica carinata HOM05D005959 ORTHO05D007263 7.5e-115 417.5 258 84.1
BolC4t28086H Brassica oleracea HOM05D005959 ORTHO05D007263 7.5e-115 417.5 258 84.1
CsaV3_3G035240 Cucumis sativus L. HOM05D005959 ORTHO05D007263 7.5e-115 417.5 261 84.3
Lsat_1_v5_gn_6_33160 Lactuca sativa HOM05D005959 ORTHO05D007263 9.8e-115 417.2 265 81.9
HanXRQChr13g0399331 Helianthus annuus HOM05D005959 ORTHO05D007263 1.3e-114 416.8 265 83.0
Sp4g19650 Schrenkiella parvula HOM05D005959 ORTHO05D007263 1.7e-114 416.4 260 83.5
Ah.15g091970 Amaranthus hybridus HOM05D005959 ORTHO05D007263 2.2e-114 416.0 265 84.2
Eucgr.K03183 Eucalyptus grandis HOM05D005959 ORTHO05D007263 2.2e-114 416.0 267 82.4
C04p10680 Brassica napus HOM05D005959 ORTHO05D007263 4.9e-114 414.8 260 82.7
BolC4t22661H Brassica oleracea HOM05D005959 ORTHO05D007263 4.9e-114 414.8 260 82.7
SGA_v2.0_scaffold94G28648 Striga asiatica HOM05D005959 ORTHO05D007263 4.9e-114 414.8 265 81.5
MELO3C009294.2 Cucumis melo HOM05D005959 ORTHO05D007263 6.4e-114 414.5 261 83.5
BcaC02g11852 Brassica carinata HOM05D005959 ORTHO05D007263 8.3e-114 414.1 260 82.7
MBI14_g34528_MAGBIO Magnolia biondii HOM05D005959 ORTHO05D007263 8.3e-114 414.1 254 87.4
BraA05t19827Z Brassica rapa HOM05D005959 ORTHO05D007263 1.1e-113 413.7 260 82.7
A05p08590 Brassica napus HOM05D005959 ORTHO05D007263 1.4e-113 413.3 260 82.3
CANSAT80G1914 Cannabis sativa HOM05D005959 ORTHO05D007263 2.4e-113 412.5 261 82.8
PSO339G1263 Papaver somniferum HOM05D005959 ORTHO05D007263 4.1e-113 411.8 259 84.2
PSO384G3658 Papaver somniferum HOM05D005959 ORTHO05D007263 1.2e-112 410.2 266 82.7
Sed0012545 Sechium edule HOM05D005959 ORTHO05D007263 2.1e-112 409.5 261 82.8
CSS0020892 Camellia sinensis var. sinensis HOM05D005959 ORTHO05D007263 3.5e-112 408.7 265 80.0
Sc01g0003780 Simmondsia chinensis HOM05D005959 ORTHO05D007263 6.0e-112 407.9 261 82.0
Sopen10g035320 Solanum pennellii HOM05D005959 ORTHO05D007263 1.7e-111 406.4 253 85.4
THA.LOC104823437 Tarenaya hassleriana HOM05D005959 ORTHO05D007263 2.3e-111 406.0 261 82.0
Lj2A103T72 Lonicera japonica HOM05D005959 ORTHO05D007263 8.6e-111 404.1 261 81.6
Lalb_Chr20g0113031 Lupinus albus HOM05D005959 ORTHO05D007263 1.1e-110 403.7 261 79.7
BcaB02g09288 Brassica carinata HOM05D005959 ORTHO05D007263 2.5e-110 402.5 260 81.2
ECA233G2168 Erigeron canadensis HOM05D005959 ORTHO05D007263 5.6e-110 401.4 253 83.8
CAN.G687.19 Capsicum annuum HOM05D005959 ORTHO05D007263 7.3e-110 401.0 241 87.6
HPP92_021201 Vanilla planifolia HOM05D005959 ORTHO05D007263 9.5e-110 400.6 261 79.7
BcaB06g28984 Brassica carinata HOM05D005959 ORTHO05D007263 6.2e-109 397.9 249 83.9
vmacro20093 Vaccinium macrocarpon HOM05D005959 ORTHO05D007263 8.1e-109 397.5 287 77.0
Gohir.A04G077900 Gossypium hirsutum HOM05D005959 ORTHO05D007263 1.4e-108 396.7 287 76.0
Aa31LG5G22650 Aethionema arabicum HOM05D005959 ORTHO05D007263 1.8e-108 396.4 265 78.5
Aa31LG5G22670 Aethionema arabicum HOM05D005959 ORTHO05D007263 2.0e-107 392.9 253 80.6
Os05g0119000 Oryza sativa ssp. japonica HOM05D005959 ORTHO05D007263 1.7e-106 389.8 258 79.1
GSVIVG01025576001 Vitis vinifera HOM05D005959 ORTHO05D007263 1.1e-105 387.1 225 90.7
CiPaw.09G185300 Carya illinoinensis HOM05D005959 ORTHO05D007263 1.2e-104 383.6 225 90.2
Aa31LG5G22660 Aethionema arabicum HOM05D005959 ORTHO05D007263 6.0e-104 381.3 264 74.6
Cpa.g.sc114.24 Carica papaya HOM05D005959 ORTHO05D007263 6.0e-104 381.3 238 83.6
SEGI_41460 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 1.3e-103 380.2 257 77.8
Eucgr.A01210 Eucalyptus grandis HOM05D005959 ORTHO05D007263 1.1e-100 370.5 265 76.2
Hma1.2p1_0111F.1_g053390 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 2.4e-100 369.4 260 73.5
AUR62041007 Chenopodium quinoa HOM05D005959 ORTHO05D007263 1.7e-98 363.2 265 77.0
Hma1.2p1_0111F.1_g053380 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 1.1e-97 360.5 260 71.5
Mapoly0099s0026 Marchantia polymorpha HOM05D005959 ORTHO05D007263 3.2e-97 359.0 262 71.8
Pp3c20_6820 Physcomitrium patens HOM05D005959 ORTHO05D007263 1.5e-94 350.1 254 71.3
AagrBONN_evm.TU.Sc2ySwM_344.2577 Anthoceros agrestis HOM05D005959 ORTHO05D007263 9.6e-94 347.4 257 70.0
COL.COLO4_10311 Corchorus olitorius HOM05D005959 ORTHO05D007263 2.0e-91 339.7 265 72.8
SMO271G0174 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 1.9e-89 333.2 254 66.9
Dinv35677 Davidia involucrata HOM05D005959 ORTHO05D007263 6.6e-87 324.7 187 92.5
SEGI_29713 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 6.2e-85 318.2 253 68.4
Actinidia05285 Actinidia chinensis HOM05D005959 ORTHO05D007263 3.1e-68 262.7 178 76.4
CBR_g49882 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-66 257.7 255 52.9
Nitab4.5_0002073g0040 Nicotiana tabacum HOM05D005959 ORTHO05D007263 1.9e-65 253.4 265 58.5
Nn2g12822 Nelumbo nucifera HOM05D005959 ORTHO05D007263 4.2e-65 252.3 161 83.2
ClCG10G020740 Citrullus lanatus HOM05D005959 ORTHO05D007263 7.9e-64 248.1 150 86.7
Actinidia11237 Actinidia chinensis HOM05D005959 ORTHO05D007263 2.2e-58 229.9 154 80.5
Actinidia19734 Actinidia chinensis HOM05D005959 ORTHO05D007263 5.3e-52 208.8 265 50.6
SMO364G0860 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 7.7e-51 204.9 235 44.7
CBR_g3295 Chara braunii HOM05D005959 ORTHO05D007263 6.7e-47 191.8 258 41.5
AagrBONN_evm.TU.Sc2ySwM_344.2052 Anthoceros agrestis HOM05D005959 ORTHO05D007263 9.4e-41 171.4 239 39.3
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.0e-34 151.4 95 78.9
AagrBONN_evm.TU.Sc2ySwM_344.389 Anthoceros agrestis HOM05D005959 ORTHO05D007263 1.3e-34 151.0 240 36.2
Actinidia13264 Actinidia chinensis HOM05D005959 ORTHO05D007263 2.9e-34 149.8 96 84.4
Nn5g28122 Nelumbo nucifera HOM05D005959 ORTHO05D007263 2.3e-31 140.2 77 93.5
Nn1g07598 Nelumbo nucifera HOM05D005959 ORTHO05D007263 8.3e-29 131.7 75 89.3
MD08G1090300 Malus domestica HOM05D005959 ORTHO05D007263 4.5e-27 125.9 117 60.7
Cre16.g673000 Chlamydomonas reinhardtii HOM05D005959 ORTHO05D007263 7.7e-27 125.2 233 36.1
TAR629G2669 Trochodendron aralioides HOM05D002023 ORTHO05D002049 2.3e-23 113.6 101 67.3
Oeu004323.1 Olea europaea HOM05D005959 ORTHO05D007263 1.7e-10 70.9 75 57.3
Actinidia13116 Actinidia chinensis HOM05D000001 ORTHO05D009676 4.4e-06 56.2 47 61.7


User provided reference genes

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