Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 3.2e-153 545.0 277 100.0
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 8.3e-117 424.1 276 79.7
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 3.7e-109 398.7 255 79.6
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 5.4e-108 394.8 262 78.6
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 7.8e-107 391.0 260 75.0
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 1.3e-106 390.2 248 79.4
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 1.5e-105 386.7 290 69.7
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 7.3e-105 384.4 235 83.0
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 1.2e-104 383.6 278 73.0
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 3.6e-104 382.1 249 80.3
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 4.7e-104 381.7 279 72.4
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 8.1e-104 380.9 264 74.2
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 1.1e-103 380.6 281 72.2
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 1.8e-103 379.8 232 82.3
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 5.2e-103 378.3 229 80.8
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 1.2e-102 377.1 233 81.1
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 1.2e-102 377.1 244 77.9
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 1.2e-102 377.1 229 80.8
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 1.5e-102 376.7 233 81.1
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 1.5e-102 376.7 233 81.1
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 1.5e-102 376.7 229 83.0
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 2.0e-102 376.3 229 80.8
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.6e-102 375.9 222 84.2
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 3.4e-102 375.6 282 70.6
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 3.4e-102 375.6 251 78.1
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 3.4e-102 375.6 222 83.8
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 4.4e-102 375.2 251 77.7
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 5.8e-102 374.8 282 70.2
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 5.8e-102 374.8 286 71.0
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 5.8e-102 374.8 243 79.8
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 7.6e-102 374.4 269 72.5
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.9e-101 372.5 221 83.7
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 6.4e-101 371.3 231 80.5
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 8.4e-101 370.9 232 81.5
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 1.1e-100 370.5 225 83.1
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 1.4e-100 370.2 222 82.9
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 2.4e-100 369.4 265 72.1
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 4.1e-100 368.6 239 77.0
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 1.6e-99 366.7 257 76.3
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 2.1e-99 366.3 253 76.3
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 2.1e-99 366.3 230 81.3
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 7.8e-99 364.4 265 73.2
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 2.3e-98 362.8 229 82.1
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 5.1e-98 361.7 242 76.0
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 5.1e-98 361.7 270 70.7
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 2.5e-97 359.4 229 79.9
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 3.3e-97 359.0 231 77.9
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 3.3e-97 359.0 231 79.2
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 4.3e-97 358.6 217 81.1
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 5.6e-97 358.2 233 77.7
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 7.3e-97 357.8 218 81.7
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 2.1e-96 356.3 275 69.1
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 2.8e-96 355.9 236 77.1
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 4.7e-96 355.1 255 72.9
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 1.1e-95 354.0 253 72.7
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 3.1e-95 352.4 220 80.9
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 4.0e-95 352.1 235 75.7
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 4.0e-95 352.1 256 71.9
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 8.9e-95 350.9 291 67.0
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 1.2e-94 350.5 274 67.5
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.2e-94 350.5 274 67.5
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 1.5e-94 350.1 227 78.0
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 2.6e-94 349.4 225 79.6
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 3.4e-94 349.0 241 74.3
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 3.4e-94 349.0 229 78.6
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 4.4e-94 348.6 227 75.8
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 7.6e-94 347.8 275 68.4
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 7.6e-94 347.8 227 77.1
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 7.6e-94 347.8 228 78.9
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 1.3e-93 347.1 235 75.3
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.2e-93 346.3 278 66.9
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 4.9e-93 345.1 227 77.5
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 6.4e-93 344.7 248 71.8
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 8.4e-93 344.4 264 69.3
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 2.1e-91 339.7 230 75.2
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 2.7e-91 339.3 283 66.1
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 1.0e-90 337.4 223 74.4
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 2.3e-90 336.3 347 56.8
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 3.9e-90 335.5 223 77.1
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 3.9e-90 335.5 223 77.1
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 1.1e-89 334.0 201 81.6
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 3.3e-89 332.4 298 62.8
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 2.4e-87 326.2 216 73.6
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 2.6e-86 322.8 215 74.9
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.3e-85 320.5 277 65.0
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 2.4e-84 316.2 231 69.7
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.4e-84 316.2 184 83.2
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 2.1e-83 313.2 170 88.8
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 6.0e-83 311.6 184 82.1
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 1.0e-82 310.8 170 88.8
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 1.5e-81 307.0 185 82.2
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 2.1e-80 303.1 238 68.1
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.1e-79 300.8 213 71.8
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 2.6e-78 296.2 228 64.9
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 5.8e-78 295.0 210 71.0
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 9.3e-76 287.7 264 59.8
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 1.6e-75 287.0 219 65.3
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 2.7e-75 286.2 171 83.6
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 3.5e-75 285.8 196 73.0
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 1.5e-73 280.4 232 65.9
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 5.6e-73 278.5 229 63.3
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 7.4e-73 278.1 192 69.3
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.1e-72 276.6 173 79.2
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 1.9e-68 263.5 287 55.4
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 1.2e-67 260.8 193 63.7
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 1.1e-63 247.7 214 63.6
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 1.8e-55 220.3 121 86.0
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 2.4e-55 219.9 279 50.5
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.0e-50 204.5 133 76.7
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 5.3e-47 192.2 123 78.9
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 5.0e-45 185.7 121 78.5
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 3.2e-44 183.0 333 40.8
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 3.2e-44 183.0 216 46.8
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 1.2e-43 181.0 222 45.9
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 3.9e-42 176.0 201 49.8
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 7.4e-41 171.8 156 59.6
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 1.3e-40 171.0 97 82.5
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 8.2e-40 168.3 97 81.4
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 9.4e-36 154.8 239 44.4
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 2.6e-33 146.7 78 87.2
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 1.1e-31 141.4 130 61.5
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 1.4e-31 141.0 80 82.5
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 5.3e-31 139.0 78 85.9
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 2.2e-21 107.1 71 76.1
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 4.2e-20 102.8 181 44.2
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 5.7e-17 92.4 79 63.3
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 1.1e-15 88.2 50 80.0
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 1.4e-15 87.8 58 75.9
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 1.4e-15 87.8 51 78.4
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 2.9e-13 80.1 47 78.7
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 6.6e-13 79.0 55 69.1
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 8.0e-11 72.0 47 68.1
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 2.6e-09 67.0 47 68.1
Cpa.g.sc179.24 Carica papaya HOM05D006042 ORTHO05D007658 2.9e-08 63.5 41 75.6
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 2.9e-08 63.5 64 57.8


User provided reference genes

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