Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.4e-162 576.2 302 100.0
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 9.7e-127 457.2 303 77.6
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 5.1e-120 434.9 313 75.7
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.1e-117 427.2 267 81.3
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 2.4e-117 426.0 311 72.7
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 4.1e-117 425.2 308 76.3
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 5.3e-117 424.9 308 74.7
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.5e-116 421.8 312 71.2
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 7.7e-116 421.0 305 73.4
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.0e-115 420.6 313 72.2
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 2.9e-115 419.1 312 70.8
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 3.8e-115 418.7 306 73.2
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 3.8e-115 418.7 303 73.9
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.4e-114 416.8 310 73.2
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.4e-114 416.8 310 72.6
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.4e-114 416.8 306 72.9
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 1.4e-114 416.8 306 72.9
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 1.9e-114 416.4 313 71.9
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 4.2e-114 415.2 313 70.6
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 4.2e-114 415.2 305 72.1
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.6e-113 413.3 308 72.4
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 6.7e-112 407.9 316 69.6
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.1e-111 407.1 326 68.7
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 2.6e-111 406.0 305 71.8
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 2.6e-111 406.0 314 68.8
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 9.7e-111 404.1 306 71.9
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 1.3e-110 403.7 304 71.4
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 2.8e-110 402.5 302 71.9
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.1e-109 400.6 305 71.1
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.8e-109 399.8 282 73.8
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 5.3e-109 398.3 293 73.4
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.2e-108 397.1 313 69.3
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.5e-108 396.7 303 71.6
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 3.5e-108 395.6 272 73.9
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 3.5e-108 395.6 304 70.7
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 1.3e-107 393.7 255 77.6
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.3e-107 393.7 302 69.2
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 6.5e-107 391.3 256 75.4
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.1e-106 390.6 263 74.5
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 1.5e-106 390.2 310 69.0
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 4.2e-106 388.7 303 71.0
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 5.5e-106 388.3 296 69.9
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.6e-105 386.7 260 75.0
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.6e-105 386.7 284 71.1
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 2.7e-105 386.0 302 67.5
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.6e-105 385.6 302 67.5
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 4.7e-105 385.2 255 76.9
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 6.1e-105 384.8 322 66.5
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 6.1e-105 384.8 322 66.5
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.0e-104 384.0 292 69.9
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.4e-104 383.6 302 67.9
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.4e-104 383.6 313 67.1
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.3e-104 382.9 302 67.5
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.0e-104 382.5 296 68.2
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 4.0e-104 382.1 301 67.4
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.1e-103 380.6 311 67.2
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.6e-103 379.4 302 68.2
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 3.3e-103 379.0 260 75.0
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 4.4e-103 378.6 296 69.3
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 9.7e-103 377.5 299 67.2
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 9.7e-103 377.5 299 67.2
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 1.3e-102 377.1 298 70.1
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.3e-102 377.1 252 74.6
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.7e-102 376.7 302 66.6
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 3.7e-102 375.6 299 66.2
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 6.3e-102 374.8 295 67.5
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 6.3e-102 374.8 302 66.2
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 1.8e-101 373.2 298 67.1
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.8e-101 373.2 252 73.8
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 7.0e-101 371.3 301 68.1
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 7.0e-101 371.3 265 71.7
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 9.1e-101 370.9 236 78.0
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.2e-100 370.5 304 65.8
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 1.2e-100 370.5 274 69.3
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.6e-100 370.2 301 66.8
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 5.9e-100 368.2 304 64.1
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 1.3e-99 367.1 302 64.9
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 2.2e-99 366.3 288 65.6
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.9e-99 365.9 259 69.5
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.9e-98 363.2 314 63.4
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.5e-98 362.8 284 68.0
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 2.1e-97 359.8 267 66.7
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.7e-97 359.4 304 62.2
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.6e-97 359.0 302 62.9
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 8.0e-97 357.8 310 62.6
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.0e-96 357.5 307 65.1
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 1.4e-96 357.1 264 69.7
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 1.8e-96 356.7 300 63.7
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 2.3e-96 356.3 296 62.2
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 3.0e-96 355.9 302 61.3
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 3.0e-96 355.9 363 55.6
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 5.2e-96 355.1 311 61.4
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 5.2e-96 355.1 236 73.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 5.2e-96 355.1 236 73.7
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 6.8e-96 354.8 277 71.1
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 8.8e-96 354.4 264 68.9
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.5e-95 353.6 324 63.6
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 3.4e-95 352.4 258 69.8
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 9.8e-95 350.9 304 61.8
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.3e-94 350.5 263 71.9
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 2.8e-94 349.4 304 61.5
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 2.8e-94 349.4 304 61.5
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 2.8e-94 349.4 304 62.2
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 3.7e-94 349.0 261 66.3
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 2.4e-93 346.3 304 61.2
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 7.0e-93 344.7 311 61.1
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.6e-92 343.6 280 62.5
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.0e-92 343.2 303 60.7
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 5.9e-92 341.7 309 61.2
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.0e-91 340.9 276 64.5
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 8.5e-91 337.8 338 54.7
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.1e-90 337.4 302 60.3
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-90 337.4 252 69.8
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.5e-90 336.3 271 67.9
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.4e-88 330.5 394 49.7
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.8e-88 330.1 381 54.1
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 3.0e-88 329.3 256 66.4
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.2e-87 327.4 283 59.7
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.6e-87 326.2 283 61.8
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.4e-87 325.9 383 53.0
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 7.5e-87 324.7 283 59.0
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 1.6e-84 317.0 224 71.4
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 2.0e-84 316.6 240 69.2
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.8e-83 312.4 290 58.3
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 5.6e-82 308.5 304 55.3
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 2.1e-81 306.6 240 63.3
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 5.2e-80 302.0 311 55.0
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 6.8e-80 301.6 305 54.8
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 5.4e-77 292.0 399 44.6
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.5e-76 289.3 220 68.6
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.5e-76 289.3 227 65.6
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.7e-67 260.4 222 59.9
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.6e-65 252.7 463 39.3
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.2e-63 247.7 251 48.6
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.2e-63 247.7 173 69.9
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 7.5e-63 245.0 189 71.4
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 4.1e-61 239.2 267 46.1
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 1.2e-60 237.7 250 50.4
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.6e-60 237.3 223 58.3
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.6e-57 226.1 255 51.0
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 3.7e-54 216.1 143 75.5
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 6.4e-54 215.3 239 44.8
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.9e-53 213.8 228 46.9
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 2.4e-53 213.4 136 77.9
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 2.4e-45 186.8 189 48.1
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 5.6e-42 175.6 142 64.8
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 4.6e-28 129.4 118 53.4
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 7.6e-23 112.1 74 75.7
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.9e-22 109.4 79 69.6
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 1.8e-19 100.9 107 44.9
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.9e-18 97.4 70 70.0
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.4e-13 81.3 188 34.6
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 4.2e-13 79.7 70 48.6
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 4.6e-12 76.3 72 55.6
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 3.0e-11 73.6 52 67.3
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 3.0e-11 73.6 50 80.0
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 9.0e-08 62.0 103 36.9
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 4.5e-07 59.7 103 35.0
FAN14G4716 Fragaria x ananassa HOM05D004474 ORTHO05D210276 4.5e-07 59.7 41 65.9
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 5.9e-07 59.3 215 27.4
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 1.3e-06 58.2 207 27.5
Atru.chr4.507 Acer truncatum HOM05D004474 ORTHO05D052242 3.8e-06 56.6 51 62.7
Aqoxy3G02205 Aquilegia oxysepala HOM05D002234 ORTHO05D002254 3.8e-06 56.6 205 26.3
HPP92_002996 Vanilla planifolia HOM05D004474 ORTHO05D432408 5.0e-06 56.2 58 60.3


User provided reference genes

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