Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 5.1e-179 630.9 318 100.0
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 7.5e-138 494.2 323 78.3
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 1.1e-128 463.8 322 75.8
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 2.7e-127 459.1 326 74.2
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 2.3e-126 456.1 321 73.5
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 8.6e-126 454.1 318 76.7
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 5.6e-125 451.4 321 75.1
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 3.6e-124 448.7 321 72.0
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 6.2e-124 448.0 309 75.1
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 1.7e-121 439.9 320 72.5
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 1.9e-120 436.4 320 71.9
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.4e-120 436.0 317 71.0
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 1.2e-119 433.7 328 69.5
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 1.6e-119 433.3 328 69.5
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.1e-119 433.0 328 68.3
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 2.1e-119 433.0 322 71.1
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 2.7e-119 432.6 328 69.5
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 1.0e-118 430.6 310 72.6
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 3.0e-118 429.1 325 72.0
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 5.1e-118 428.3 309 71.5
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 1.1e-117 427.2 308 71.8
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 1.1e-117 427.2 319 70.8
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 1.9e-117 426.4 319 71.8
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 5.6e-117 424.9 305 72.1
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 1.2e-116 423.7 305 71.5
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 1.6e-116 423.3 313 69.3
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 1.8e-115 419.9 265 78.1
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 6.8e-115 417.9 313 70.0
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 8.9e-115 417.5 311 70.1
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 1.2e-114 417.2 305 70.2
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 1.5e-114 416.8 319 67.1
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 9.9e-114 414.1 327 66.1
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 1.3e-113 413.7 314 68.8
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 1.7e-113 413.3 305 69.5
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 6.4e-113 411.4 309 68.6
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 6.4e-113 411.4 309 68.6
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 1.1e-112 410.6 315 68.6
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.9e-112 409.8 314 68.5
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 1.9e-112 409.8 309 68.3
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 2.4e-112 409.5 289 75.1
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.4e-112 408.3 314 68.2
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 9.2e-112 407.5 319 69.0
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 2.1e-111 406.4 312 67.9
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 1.7e-110 403.3 303 68.6
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 1.1e-109 400.6 348 62.1
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 3.3e-109 399.1 310 67.1
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 9.6e-109 397.5 323 68.1
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 2.1e-108 396.4 321 65.4
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 3.6e-108 395.6 319 65.8
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 6.2e-108 394.8 312 67.0
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 1.1e-107 394.0 294 68.4
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 3.1e-107 392.5 313 68.4
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 1.2e-106 390.6 287 70.4
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 2.0e-106 389.8 326 67.2
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 1.7e-105 386.7 284 69.0
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 3.8e-105 385.6 256 75.0
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 3.8e-105 385.6 257 73.9
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 1.4e-104 383.6 288 69.8
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 1.9e-104 383.3 319 65.5
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 1.9e-104 383.3 319 65.8
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 2.4e-104 382.9 282 69.1
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 2.4e-104 382.9 308 66.2
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 4.2e-104 382.1 226 79.6
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 1.6e-103 380.2 319 64.6
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 2.1e-103 379.8 316 64.9
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 7.8e-103 377.9 291 67.7
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 5.1e-102 375.2 322 62.7
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 8.7e-102 374.4 326 66.6
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 1.1e-101 374.0 319 63.6
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 3.3e-101 372.5 322 65.8
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 3.3e-101 372.5 317 65.9
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 5.6e-101 371.7 280 68.9
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 7.3e-101 371.3 317 63.4
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 9.6e-101 370.9 320 64.7
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 1.3e-100 370.5 320 62.2
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 1.6e-100 370.2 319 63.0
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 2.8e-100 369.4 318 64.2
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 4.8e-100 368.6 318 64.2
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 8.1e-100 367.9 322 62.7
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 8.1e-100 367.9 322 62.7
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.1e-99 367.5 296 65.9
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 3.1e-99 365.9 337 59.9
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 6.9e-99 364.8 312 63.8
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 9.9e-98 360.9 286 70.3
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 2.4e-96 356.3 315 61.0
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 7.1e-96 354.8 273 67.4
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 3.0e-94 349.4 272 66.9
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.5e-93 346.3 217 77.9
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 1.3e-92 344.0 306 59.8
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 5.3e-91 338.6 215 77.7
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 1.5e-90 337.0 197 82.2
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 2.0e-90 336.7 318 56.3
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 5.8e-90 335.1 269 67.3
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 1.1e-83 314.3 177 86.4
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 9.0e-83 311.2 178 82.6
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 2.6e-82 309.7 223 71.7
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 4.6e-79 298.9 283 56.2
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 1.5e-77 293.9 262 58.8
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 4.3e-77 292.4 225 66.2
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.4e-72 277.3 188 72.9
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 2.5e-72 276.6 237 64.1
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 5.3e-67 258.8 216 64.4
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 7.7e-66 255.0 196 62.8
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 1.9e-64 250.4 264 51.1
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 7.2e-64 248.4 202 59.4
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 1.8e-62 243.8 228 60.5
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 2.4e-59 233.4 210 55.7
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 1.5e-53 214.2 268 45.9
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 2.0e-45 187.2 164 57.9
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 7.7e-42 175.3 228 42.1
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 8.5e-41 171.8 205 42.9
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 8.5e-41 171.8 125 65.6
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 1.5e-32 144.4 89 74.2
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 1.4e-30 137.9 96 71.9
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 1.2e-29 134.8 120 52.5
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 1.7e-28 131.0 87 74.7
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 3.3e-24 116.7 60 91.7
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 2.1e-23 114.0 113 59.3
Cpa.g.sc14.61 Carica papaya HOM05D006434 ORTHO05D008069 7.8e-10 68.9 115 47.8
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 3.0e-09 67.0 37 81.1
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 5.6e-08 62.8 139 31.7


User provided reference genes

Program Settings