Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012146m.g Citrus clementina HOM05D006950 ORTHO05D008798 2.1e-194 682.2 337 100.0
Atru.chr1.1690 Acer truncatum HOM05D006950 ORTHO05D008798 8.2e-159 563.9 337 82.8
Manes.02G068900 Manihot esculenta HOM05D006950 ORTHO05D008798 8.5e-156 553.9 327 80.7
Thecc.04G133400 Theobroma cacao HOM05D006950 ORTHO05D008798 7.4e-152 540.8 341 78.9
TWI53G1811 Tripterygium wilfordii HOM05D006950 ORTHO05D008798 1.3e-151 540.0 324 80.2
Potri.004G099300 Populus trichocarpa HOM05D006950 ORTHO05D008798 1.8e-150 536.2 342 78.1
Gorai.007G181600 Gossypium raimondii HOM05D006950 ORTHO05D008798 1.3e-148 530.0 324 78.1
Gohir.A11G163600 Gossypium hirsutum HOM05D006950 ORTHO05D008798 1.7e-148 529.6 324 77.8
Cpa.g.sc282.6 Carica papaya HOM05D006950 ORTHO05D008798 1.4e-147 526.6 341 77.1
Gohir.D11G169900 Gossypium hirsutum HOM05D006950 ORTHO05D008798 1.9e-147 526.2 324 77.2
GSVIVG01031019001 Vitis vinifera HOM05D006950 ORTHO05D008798 3.2e-147 525.4 339 75.2
Dinv33949 Davidia involucrata HOM05D006950 ORTHO05D008798 1.2e-146 523.5 337 76.0
CiPaw.04G042300 Carya illinoinensis HOM05D006950 ORTHO05D008798 2.1e-146 522.7 327 78.3
Haze_14155 Corylus avellana HOM05D006950 ORTHO05D008798 1.0e-145 520.4 344 74.7
Prupe.3G142000 Prunus persica HOM05D006950 ORTHO05D008798 1.4e-142 510.0 352 71.3
CANSAT78G2296 Cannabis sativa HOM05D006950 ORTHO05D008798 2.4e-142 509.2 339 74.9
TAR629G2916 Trochodendron aralioides HOM05D006950 ORTHO05D008798 2.4e-142 509.2 345 73.6
vmacro05553 Vaccinium macrocarpon HOM05D006950 ORTHO05D008798 9.1e-142 507.3 339 72.9
MD17G1244700 Malus domestica HOM05D006950 ORTHO05D008798 1.2e-141 506.9 340 72.4
Actinidia36323 Actinidia chinensis HOM05D006950 ORTHO05D008798 4.5e-141 505.0 339 71.7
PGR142G3639 Punica granatum HOM05D006950 ORTHO05D008798 1.6e-138 496.5 316 75.0
EL10Ac2g04564 Beta vulgaris HOM05D006950 ORTHO05D008798 2.1e-138 496.1 324 73.8
Lj4A191T50 Lonicera japonica HOM05D006950 ORTHO05D008798 6.1e-138 494.6 326 73.0
Hma1.2p1_0136F.1_g062250 Hydrangea macrophylla HOM05D006950 ORTHO05D008798 4.0e-137 491.9 337 71.2
Nitab4.5_0000912g0220 Nicotiana tabacum HOM05D006950 ORTHO05D008798 5.7e-136 488.0 329 70.5
Hund13713 Selenicereus undatus HOM05D006950 ORTHO05D008798 2.2e-135 486.1 327 71.9
Nitab4.5_0000659g0020 Nicotiana tabacum HOM05D006950 ORTHO05D008798 6.3e-135 484.6 329 70.2
Oeu007452.1 Olea europaea HOM05D006950 ORTHO05D008798 1.4e-134 483.4 324 72.5
Glyma.18G296400 Glycine max HOM05D006950 ORTHO05D008798 3.1e-134 482.3 330 70.0
Eucgr.G03073 Eucalyptus grandis HOM05D006950 ORTHO05D008798 7.0e-134 481.1 308 76.0
MSTRG.15296 Avicennia marina HOM05D006950 ORTHO05D008798 9.1e-134 480.7 328 72.9
Migut.L00319 Erythranthe guttata HOM05D006950 ORTHO05D008798 9.1e-134 480.7 328 72.9
Cc07_g08790 Coffea canephora HOM05D006950 ORTHO05D008798 1.2e-133 480.3 337 69.7
arahy.Tifrunner.gnm1.ann1.J0JTFL Arachis hypogaea HOM05D006950 ORTHO05D008798 2.0e-133 479.6 318 72.0
arahy.Tifrunner.gnm1.ann1.QXSY6T Arachis hypogaea HOM05D006950 ORTHO05D008798 2.0e-133 479.6 318 72.0
Lalb_Chr17g0335791 Lupinus albus HOM05D006950 ORTHO05D008798 2.6e-133 479.2 315 74.3
Peaxi162Scf00394g00061 Petunia axillaris HOM05D006950 ORTHO05D008798 3.5e-133 478.8 338 68.6
Nn3g17879 Nelumbo nucifera HOM05D006950 ORTHO05D008798 7.7e-133 477.6 349 67.3
PGSC0003DMG400026406 Solanum tuberosum HOM05D006950 ORTHO05D008798 1.7e-132 476.5 320 70.0
Lj1g0016691 Lotus japonicus HOM05D006950 ORTHO05D008798 5.0e-132 474.9 325 72.9
Phvul.008G006100 Phaseolus vulgaris HOM05D006950 ORTHO05D008798 8.5e-132 474.2 330 70.3
TPR.G9714 Trifolium pratense HOM05D006950 ORTHO05D008798 1.1e-131 473.8 316 73.1
AL7G52300 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 7.2e-131 471.1 324 70.4
Sed0021084 Sechium edule HOM05D006950 ORTHO05D008798 7.2e-131 471.1 342 68.7
Medtr7g007310 Medicago truncatula HOM05D006950 ORTHO05D008798 2.7e-130 469.2 315 72.1
VMungo1383G3190 Vigna mungo HOM05D006950 ORTHO05D008798 4.7e-130 468.4 327 69.4
Aqoxy3G00267 Aquilegia oxysepala HOM05D006950 ORTHO05D008798 1.0e-129 467.2 322 68.6
ECA246G0391 Erigeron canadensis HOM05D006950 ORTHO05D008798 1.8e-129 466.5 329 69.0
Thhalv10027821m.g Eutrema salsugineum HOM05D006950 ORTHO05D008798 3.0e-129 465.7 336 67.3
HanXRQChr15g0471491 Helianthus annuus HOM05D006950 ORTHO05D008798 4.0e-129 465.3 327 69.7
CsaV3_1G032300 Cucumis sativus L. HOM05D006950 ORTHO05D008798 6.8e-129 464.5 311 73.3
MBI16_g34414_MAGBIO Magnolia biondii HOM05D006950 ORTHO05D008798 2.0e-128 463.0 349 65.0
AL7G52280 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 2.6e-128 462.6 325 68.9
AL7G52430 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 2.6e-128 462.6 325 68.9
THA.LOC104805569 Tarenaya hassleriana HOM05D006950 ORTHO05D008798 2.6e-128 462.6 337 68.0
ClCG03G006740 Citrullus lanatus HOM05D006950 ORTHO05D008798 3.7e-127 458.8 360 65.8
CAN.G625.25 Capsicum annuum HOM05D006950 ORTHO05D008798 8.3e-127 457.6 339 64.3
Sopen02g030760 Solanum pennellii HOM05D006950 ORTHO05D008798 8.3e-127 457.6 320 67.8
C06p18110 Brassica napus HOM05D006950 ORTHO05D008798 1.1e-126 457.2 322 68.9
A07p19680 Brassica napus HOM05D006950 ORTHO05D008798 3.1e-126 455.7 323 70.0
BolC6t37017H Brassica oleracea HOM05D006950 ORTHO05D008798 5.4e-126 454.9 323 69.3
BraA07t29668Z Brassica rapa HOM05D006950 ORTHO05D008798 5.4e-126 454.9 323 70.0
BcaC08g44377 Brassica carinata HOM05D006950 ORTHO05D008798 9.1e-126 454.1 322 68.3
Aa31LG9G17120 Aethionema arabicum HOM05D006950 ORTHO05D008798 1.6e-125 453.4 327 67.6
Cfa007922 Carpinus fangiana HOM05D006950 ORTHO05D008798 2.2e-124 449.5 365 64.9
Duzib138G1034 Durio zibethinus HOM05D006950 ORTHO05D008798 2.2e-124 449.5 289 78.5
AUR62023300 Chenopodium quinoa HOM05D006950 ORTHO05D008798 1.1e-123 447.2 328 68.9
Lsat_1_v5_gn_3_79740 Lactuca sativa HOM05D006950 ORTHO05D008798 7.2e-123 444.5 328 69.8
Eucgr.G03074 Eucalyptus grandis HOM05D006950 ORTHO05D008798 9.4e-123 444.1 308 67.9
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 9.4e-123 444.1 323 65.9
CDE06G1236 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 1.6e-122 443.4 309 68.0
PSO017G6790 Papaver somniferum HOM05D006950 ORTHO05D008798 1.6e-122 443.4 317 67.2
PSO478G4580 Papaver somniferum HOM05D006950 ORTHO05D008798 9.8e-120 434.1 316 66.8
Sc11g0008340 Simmondsia chinensis HOM05D006950 ORTHO05D008798 8.3e-119 431.0 345 63.5
ATR1125G044 Amborella trichopoda HOM05D006950 ORTHO05D008798 1.4e-118 430.3 314 67.2
Sp7g03690 Schrenkiella parvula HOM05D006950 ORTHO05D008798 7.7e-117 424.5 288 72.6
Psat3g205440 Pisum sativum HOM05D006950 ORTHO05D008798 1.3e-116 423.7 316 67.1
Carub.0007s3770 Capsella rubella HOM05D006950 ORTHO05D008798 2.8e-114 416.0 281 71.5
BcaB02g08012 Brassica carinata HOM05D006950 ORTHO05D008798 8.9e-113 411.0 298 67.1
COL.COLO4_09336 Corchorus olitorius HOM05D006950 ORTHO05D008798 4.6e-109 398.7 306 66.0
Rhsim10G0067400 Rhododendron simsii HOM05D006950 ORTHO05D008798 8.0e-106 387.9 322 63.0
MELO3C002748.2 Cucumis melo HOM05D006950 ORTHO05D008798 5.8e-104 381.7 267 71.5
QL02p051313 Quercus lobata HOM05D006950 ORTHO05D008798 3.5e-101 372.5 251 72.9
DCAR_017190 Daucus carota HOM05D006950 ORTHO05D008798 1.9e-99 366.7 336 56.8
Ca_04046_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 2.0e-96 356.7 225 77.3
CSS0013921 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 1.3e-95 354.0 235 69.4
Pp3c2_1510 Physcomitrium patens HOM05D006950 ORTHO05D008798 7.8e-93 344.7 297 54.9
AUR62009002 Chenopodium quinoa HOM05D006950 ORTHO05D008798 2.5e-91 339.7 318 58.8
AL686U10010 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 2.9e-87 326.2 324 52.2
CARHR214230 Cardamine hirsuta HOM05D006950 ORTHO05D008798 5.1e-84 315.5 209 72.2
SMO232G0122 Selaginella moellendorffii HOM05D006950 ORTHO05D008798 8.6e-84 314.7 301 52.2
Sabra04G0080700 Salix brachista HOM05D006950 ORTHO05D008798 2.5e-83 313.2 215 71.6
Mapoly0010s0040 Marchantia polymorpha HOM05D006950 ORTHO05D008798 5.4e-78 295.4 300 49.0
AL7G52400 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 2.7e-77 293.1 315 52.7
AT5G38360 Arabidopsis thaliana HOM05D006950 ORTHO05D008798 2.2e-71 273.5 193 66.8
Nn3g17880 Nelumbo nucifera HOM05D006950 ORTHO05D008798 4.9e-71 272.3 195 65.1
CBR_g51039 Chara braunii HOM05D006950 ORTHO05D008798 3.4e-64 249.6 354 38.7
Cre04.g213100 Chlamydomonas reinhardtii HOM05D006950 ORTHO05D008798 1.7e-63 247.3 331 40.8
MCO15G495 Micromonas commoda HOM05D006950 ORTHO05D008798 1.3e-58 231.1 258 45.3
arahy.Tifrunner.gnm1.ann1.IRCK44 Arachis hypogaea HOM05D006950 ORTHO05D008798 6.9e-57 225.3 170 67.1
CDE12G0582 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 6.3e-50 202.2 299 41.5
arahy.Tifrunner.gnm1.ann1.5L16AK Arachis hypogaea HOM05D006950 ORTHO05D008798 2.7e-45 186.8 200 49.5
arahy.Tifrunner.gnm1.ann1.J8JPII Arachis hypogaea HOM05D006950 ORTHO05D008798 8.2e-42 175.3 209 47.4
AagrBONN_evm.TU.Sc2ySwM_362.1440 Anthoceros agrestis HOM05D006950 ORTHO05D008798 5.3e-41 172.6 131 61.1
AL7G52260 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 6.7e-36 155.6 114 63.2
Glyma.08G365850 Glycine max HOM05D006950 ORTHO05D008798 1.1e-35 154.8 103 74.8
QL02p051310 Quercus lobata HOM05D006950 ORTHO05D008798 5.7e-35 152.5 90 80.0
Ca_04053_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 1.3e-34 151.4 89 79.8
PRCOL_00005525 Prasinoderma coloniale HOM05D006950 ORTHO05D008798 6.9e-33 145.6 350 31.1
arahy.Tifrunner.gnm1.ann1.BFZE3W Arachis hypogaea HOM05D006950 ORTHO05D008798 5.5e-30 136.0 91 74.7
CSS0023207 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 9.4e-30 135.2 103 55.3
Solyc02g086080.4 Solanum lycopersicum HOM05D006950 ORTHO05D008798 1.5e-27 127.9 101 60.4
AagrBONN_evm.TU.Sc2ySwM_368.701 Anthoceros agrestis HOM05D006950 ORTHO05D008798 2.6e-27 127.1 280 31.1
Os04g0381400 Oryza sativa ssp. japonica HOM05D006950 ORTHO05D008798 1.8e-25 120.9 94 56.4
Potri.017G115350 Populus trichocarpa HOM05D006950 ORTHO05D008798 1.7e-10 71.2 51 68.6
Haze_01682 Corylus avellana HOM05D006950 ORTHO05D043621 7.7e-08 62.4 30 80.0
Lj5g0015287 Lotus japonicus HOM05D000916 ORTHO05D007921 2.2e-07 60.8 335 26.9
Psat6g112920 Pisum sativum HOM05D000916 ORTHO05D007921 2.2e-07 60.8 274 25.2
Eucgr.F04110 Eucalyptus grandis HOM05D000916 ORTHO05D007921 2.9e-07 60.5 304 26.3
MBI03_g28954_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D007921 8.5e-07 58.9 290 25.5
arahy.Tifrunner.gnm1.ann1.G72GGE Arachis hypogaea HOM05D000916 ORTHO05D007921 1.1e-06 58.5 272 26.8
VMungo0720G0569 Vigna mungo HOM05D000916 ORTHO05D007921 2.5e-06 57.4 309 25.9
MSTRG.25473 Avicennia marina HOM05D000916 ORTHO05D007921 3.2e-06 57.0 304 27.0
Glyma.20G214000 Glycine max HOM05D000916 ORTHO05D007921 3.2e-06 57.0 304 26.3
TPR.G16625 Trifolium pratense HOM05D000916 ORTHO05D007921 3.2e-06 57.0 274 24.8
TWI12G0975 Tripterygium wilfordii HOM05D000916 ORTHO05D007921 3.2e-06 57.0 298 25.8
Phvul.007G113800 Phaseolus vulgaris HOM05D000916 ORTHO05D007921 4.2e-06 56.6 309 25.6
AUR62017447 Chenopodium quinoa HOM05D000916 ORTHO05D007921 7.2e-06 55.8 254 27.6


User provided reference genes

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