Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 8.2e-219 763.5 393 100.0
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 3.4e-47 193.4 419 36.8
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 1.9e-42 177.6 397 34.8
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 2.9e-38 163.7 403 33.3
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 1.1e-37 161.8 389 38.0
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.1e-37 161.8 403 32.8
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.4e-37 161.4 403 33.0
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 2.1e-36 157.5 409 32.8
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 3.5e-36 156.8 477 33.8
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 1.5e-34 151.4 415 35.9
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 1.2e-33 148.3 490 32.2
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.8e-32 144.4 409 34.2
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 5.2e-32 142.9 466 31.5
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 1.2e-31 141.7 408 33.1
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 4.4e-31 139.8 463 33.0
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 5.8e-31 139.4 389 32.9
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 3.8e-30 136.7 160 51.9
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.1e-29 135.2 410 32.9
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 1.4e-29 134.8 461 32.5
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 1.9e-29 134.4 404 33.4
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 7.1e-29 132.5 394 32.7
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 1.2e-28 131.7 230 39.1
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 2.7e-28 130.6 390 32.6
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 3.5e-28 130.2 397 32.7
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 4.6e-28 129.8 386 30.1
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 6.0e-28 129.4 299 36.1
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 3.3e-26 123.6 414 31.4
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 4.8e-25 119.8 437 30.4
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 1.4e-24 118.2 352 34.1
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 5.3e-24 116.3 307 32.6
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 9.0e-24 115.5 454 27.5
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 1.5e-23 114.8 412 30.3
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 9.9e-23 112.1 379 29.3
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 1.3e-22 111.7 378 29.6
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.9e-22 110.5 394 33.0
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 3.8e-22 110.2 377 29.2
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 4.9e-22 109.8 382 30.4
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 6.4e-22 109.4 383 28.2
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 8.4e-22 109.0 351 27.4
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 1.9e-21 107.8 526 27.6
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 2.4e-21 107.5 435 28.7
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 7.1e-21 105.9 407 27.8
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 1.2e-20 105.1 290 30.7
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 1.6e-20 104.8 234 33.8
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 1.6e-20 104.8 489 30.5
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 4.6e-20 103.2 416 29.6
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 4.6e-20 103.2 73 68.5
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 1.0e-19 102.1 484 25.8
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 1.8e-19 101.3 425 29.2
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 3.0e-19 100.5 71 64.8
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 3.9e-19 100.1 71 64.8
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 1.1e-18 98.6 73 63.0
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 2.5e-18 97.4 393 27.0
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 7.4e-18 95.9 72 63.9
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 9.6e-18 95.5 432 30.1
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 9.6e-18 95.5 116 45.7
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.3e-17 95.1 372 30.4
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.1e-17 94.4 71 60.6
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 2.1e-17 94.4 456 25.2
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 2.1e-17 94.4 195 34.4
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 6.2e-17 92.8 298 30.2
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.4e-16 91.7 75 62.7
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.8e-16 91.3 345 28.7
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 2.4e-16 90.9 352 27.3
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 5.3e-16 89.7 352 29.0
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 9.0e-16 89.0 347 28.2
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 1.2e-15 88.6 175 34.3
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 4.5e-15 86.7 166 37.3
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 4.9e-14 83.2 368 28.5
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 1.1e-13 82.0 85 50.6
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 2.4e-13 80.9 200 32.5
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 3.2e-13 80.5 219 34.2
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 1.2e-12 78.6 371 27.8
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 2.1e-12 77.8 75 46.7
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 2.7e-12 77.4 73 46.6
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 2.7e-12 77.4 213 33.8
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 7.9e-12 75.9 174 29.9
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 7.9e-12 75.9 156 37.2
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 1.3e-11 75.1 77 46.8
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 1.3e-11 75.1 174 29.9
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 1.8e-11 74.7 76 51.3
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 1.8e-11 74.7 76 51.3
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 2.3e-11 74.3 376 27.9
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 2.3e-11 74.3 204 31.4
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 3.0e-11 73.9 171 31.0
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 3.0e-11 73.9 166 32.5
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 3.0e-11 73.9 67 50.7
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 3.9e-11 73.6 83 44.6
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 3.9e-11 73.6 162 32.1
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 6.7e-11 72.8 225 30.2
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 6.7e-11 72.8 75 50.7
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 6.7e-11 72.8 160 33.1
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 6.7e-11 72.8 51 64.7
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 8.7e-11 72.4 171 31.6
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 8.7e-11 72.4 171 31.0
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 8.7e-11 72.4 122 36.9
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 1.1e-10 72.0 161 34.2
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 1.5e-10 71.6 144 34.0
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 1.9e-10 71.2 202 33.7
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 3.3e-10 70.5 247 27.1
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 3.3e-10 70.5 75 46.7
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 3.3e-10 70.5 367 27.0
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 1.3e-09 68.6 77 44.2
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 1.6e-09 68.2 148 33.8
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 1.2e-07 62.0 72 43.1
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 2.6e-07 60.8 391 26.1
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 2.6e-07 60.8 284 27.1
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 4.9e-06 56.6 283 25.8


User provided reference genes

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