Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 4.1e-221 771.2 408 100.0
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 1.1e-144 517.3 333 81.1
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 3.1e-144 515.8 392 71.7
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 5.8e-143 511.5 403 70.7
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 2.9e-142 509.2 333 79.6
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 2.5e-141 506.1 406 70.4
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 1.5e-138 496.9 394 69.5
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 1.5e-138 496.9 419 66.6
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 1.9e-138 496.5 410 69.8
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 9.6e-138 494.2 416 66.3
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 2.1e-137 493.0 412 68.2
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 2.8e-137 492.7 416 66.1
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 3.7e-137 492.3 365 74.0
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 8.2e-137 491.1 404 67.1
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 8.2e-137 491.1 380 70.0
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 1.4e-136 490.3 349 72.5
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 2.4e-136 489.6 350 74.0
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 5.3e-136 488.4 364 72.3
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 5.3e-136 488.4 349 74.5
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 1.2e-135 487.3 354 73.4
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 1.5e-135 486.9 364 73.4
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 2.0e-135 486.5 348 75.0
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 2.0e-135 486.5 404 66.3
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 2.6e-135 486.1 424 65.3
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 3.4e-135 485.7 364 71.7
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 3.4e-135 485.7 351 74.4
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 4.5e-135 485.3 410 67.3
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 5.8e-135 485.0 372 70.2
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.0e-134 484.2 409 65.8
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 1.7e-134 483.4 423 65.5
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 3.8e-134 482.3 416 66.8
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 3.8e-134 482.3 426 67.1
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 4.9e-134 481.9 429 64.6
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 6.5e-134 481.5 422 64.7
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 1.1e-133 480.7 402 68.2
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.9e-133 479.9 409 67.0
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 2.5e-133 479.6 341 72.7
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 4.2e-133 478.8 415 66.5
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 7.1e-133 478.0 384 66.7
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 7.1e-133 478.0 390 69.5
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 9.3e-133 477.6 427 63.0
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 2.7e-132 476.1 415 65.3
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 4.6e-132 475.3 356 71.3
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 1.0e-131 474.2 405 64.4
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 1.8e-131 473.4 350 70.9
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 1.8e-131 473.4 319 77.1
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 2.3e-131 473.0 414 65.5
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 3.0e-131 472.6 337 73.3
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 8.7e-131 471.1 360 67.2
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 8.7e-131 471.1 403 63.5
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 1.9e-130 469.9 429 63.6
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 2.5e-130 469.5 311 76.2
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 2.5e-130 469.5 426 65.3
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 7.4e-130 468.0 392 64.8
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 9.7e-130 467.6 398 64.1
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 9.7e-130 467.6 360 66.9
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 1.6e-129 466.8 365 67.7
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.2e-129 466.5 325 76.0
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 1.1e-128 464.2 428 62.6
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 1.4e-128 463.8 359 68.5
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 1.4e-128 463.8 389 66.8
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 2.4e-128 463.0 415 64.1
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 2.4e-128 463.0 419 64.2
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 1.5e-127 460.3 295 78.3
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 1.0e-126 457.6 417 64.5
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.7e-126 456.8 415 61.4
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 6.5e-126 454.9 342 70.2
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 1.4e-125 453.8 322 72.7
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 2.1e-124 449.9 410 62.7
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 2.1e-124 449.9 364 66.2
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 2.7e-124 449.5 392 64.0
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 2.7e-124 449.5 389 64.3
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 4.6e-124 448.7 278 83.1
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 7.9e-124 448.0 406 62.3
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.8e-123 446.8 495 56.2
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 1.3e-121 440.7 417 61.6
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 1.7e-121 440.3 413 62.2
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 2.2e-121 439.9 277 79.8
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 8.2e-121 438.0 347 68.6
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 2.4e-120 436.4 351 64.4
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 3.8e-118 429.1 291 74.9
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 3.6e-116 422.5 510 50.2
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 4.7e-116 422.2 364 62.6
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.3e-113 414.1 261 82.0
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.3e-113 414.1 334 67.4
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 1.7e-113 413.7 298 73.2
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 4.4e-106 389.0 347 61.4
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.4e-104 384.0 518 49.4
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 4.1e-104 382.5 335 60.0
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 2.6e-103 379.8 373 56.0
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 4.5e-103 379.0 373 54.4
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 1.5e-101 374.0 244 77.5
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 2.1e-100 370.2 326 62.6
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 1.5e-98 364.0 347 55.9
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 1.8e-96 357.1 290 66.9
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 1.6e-95 354.0 400 51.5
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 7.7e-95 351.7 374 57.2
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 1.6e-87 327.4 265 70.2
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 3.3e-85 319.7 294 64.3
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 5.5e-85 318.9 258 66.7
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 1.0e-83 314.7 298 60.7
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 1.2e-82 311.2 263 66.5
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 7.8e-79 298.5 371 47.4
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 5.0e-78 295.8 296 57.1
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.1e-77 294.7 264 61.4
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 7.3e-77 292.0 305 49.2
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 3.6e-76 289.7 200 75.5
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 1.1e-69 268.1 160 80.6
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 9.2e-64 248.4 158 75.3
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 8.6e-62 241.9 154 76.0
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 8.3e-57 225.3 216 60.6
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 2.1e-47 194.1 279 49.5
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 1.0e-38 165.2 206 48.1
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 6.7e-30 136.0 136 59.6
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 8.1e-28 129.0 109 63.3
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 7.6e-26 122.5 111 59.5
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 2.9e-25 120.6 111 57.7
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 4.3e-21 106.7 90 61.1
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 9.0e-19 99.0 253 30.8
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 5.8e-18 96.3 61 75.4
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 1.0e-14 85.5 85 54.1
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 2.4e-11 74.3 157 43.9
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 4.5e-10 70.1 34 94.1
Pp3s42_60 Physcomitrium patens HOM05D000182 ORTHO05D011688 1.6e-07 61.6 262 24.4
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 2.1e-07 61.2 70 51.4


User provided reference genes

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