Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 2.0e-199 699.1 420 100.0
Atru.chr8.1896 Acer truncatum HOM05D007360 ORTHO05D008235 8.5e-105 384.8 424 56.8
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 2.3e-86 323.6 448 48.2
Haze_20630 Corylus avellana HOM05D007360 ORTHO05D008235 4.0e-86 322.8 452 48.2
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 5.9e-82 308.9 423 52.7
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 8.5e-81 305.1 421 49.6
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 9.8e-77 291.6 429 45.9
Cpa.g.sc174.13 Carica papaya HOM05D007360 ORTHO05D008235 3.1e-75 286.6 428 43.7
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 3.1e-75 286.6 415 47.7
ClCG10G020460 Citrullus lanatus HOM05D007360 ORTHO05D008235 1.2e-71 274.6 468 42.3
Duzib128G1437 Durio zibethinus HOM05D007360 ORTHO05D008235 2.8e-71 273.5 417 45.3
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 2.6e-69 266.9 424 43.9
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 1.7e-68 264.2 282 55.3
CsaV3_3G035660 Cucumis sativus L. HOM05D007360 ORTHO05D008235 1.8e-67 260.8 459 41.6
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 5.4e-67 259.2 418 45.5
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 1.6e-66 257.7 383 48.6
Gohir.D04G115000 Gossypium hirsutum HOM05D007360 ORTHO05D008235 7.8e-66 255.4 411 43.6
Gorai.009G419600 Gossypium raimondii HOM05D007360 ORTHO05D008235 1.7e-65 254.2 411 43.3
Gohir.A04G075900 Gossypium hirsutum HOM05D007360 ORTHO05D008235 8.6e-65 251.9 411 43.1
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 1.9e-64 250.8 421 44.4
Dinv35727 Davidia involucrata HOM05D007360 ORTHO05D008235 2.8e-63 246.9 296 53.0
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 1.4e-62 244.6 305 49.8
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 5.2e-62 242.7 290 51.0
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 6.8e-62 242.3 419 47.7
Hma1.2p1_0111F.1_g053990 Hydrangea macrophylla HOM05D007360 ORTHO05D008235 5.8e-61 239.2 243 58.8
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 9.8e-61 238.4 440 40.5
Manes.08G004115 Manihot esculenta HOM05D007360 ORTHO05D008235 1.3e-60 238.0 418 41.1
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 3.7e-60 236.5 289 50.9
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 7.8e-58 228.8 449 45.0
Manes.08G004904 Manihot esculenta HOM05D007360 ORTHO05D008235 7.8e-58 228.8 388 42.0
Manes.12G045236 Manihot esculenta HOM05D007360 ORTHO05D008235 3.0e-57 226.9 381 41.2
CANSAT80G2624 Cannabis sativa HOM05D007360 ORTHO05D008235 9.5e-56 221.9 442 39.8
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 6.8e-54 215.7 247 54.3
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 4.4e-53 213.0 385 49.1
Glyma.13G137900 Glycine max HOM05D007360 ORTHO05D008235 5.8e-53 212.6 287 47.7
Manes.08G004132 Manihot esculenta HOM05D007360 ORTHO05D008235 2.2e-52 210.7 419 38.9
Lalb_Chr02g0156301 Lupinus albus HOM05D007360 ORTHO05D008235 4.9e-52 209.5 416 38.5
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 6.4e-52 209.1 281 48.4
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 8.3e-52 208.8 281 47.3
Manes.05G197400 Manihot esculenta HOM05D007360 ORTHO05D008235 2.4e-51 207.2 389 39.8
FAN02G3036 Fragaria x ananassa HOM05D007360 ORTHO05D008235 5.4e-51 206.1 436 44.5
Solyc09g007460.4 Solanum lycopersicum HOM05D007360 ORTHO05D008235 5.4e-51 206.1 281 47.0
Nitab4.5_0006156g0020 Nicotiana tabacum HOM05D007360 ORTHO05D008235 9.2e-51 205.3 285 46.7
Phvul.007G164700 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 1.2e-50 204.9 281 46.6
Oeu060091.1 Olea europaea HOM05D007360 ORTHO05D008235 3.5e-50 203.4 288 49.3
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 6.0e-50 202.6 281 46.6
Glyma.10G050400 Glycine max HOM05D007360 ORTHO05D008235 7.8e-50 202.2 287 48.4
Manes.08G014114 Manihot esculenta HOM05D007360 ORTHO05D008235 1.0e-49 201.8 411 37.5
Nitab4.5_0000669g0130 Nicotiana tabacum HOM05D007360 ORTHO05D008235 1.0e-49 201.8 279 47.7
Manes.08G004103 Manihot esculenta HOM05D007360 ORTHO05D008235 1.3e-49 201.4 419 37.2
FAN05G5130 Fragaria x ananassa HOM05D007360 ORTHO05D008235 3.0e-49 200.3 429 44.8
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 3.9e-49 199.9 266 46.6
Peaxi162Scf00005g04017 Petunia axillaris HOM05D007360 ORTHO05D008235 3.9e-49 199.9 277 48.0
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 1.1e-46 191.8 251 49.0
Cc06_g03670 Coffea canephora HOM05D007360 ORTHO05D008235 1.4e-46 191.4 285 44.6
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 2.3e-46 190.7 276 48.9
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 1.5e-45 188.0 424 39.2
Manes.08G004107 Manihot esculenta HOM05D007360 ORTHO05D008235 3.4e-45 186.8 423 41.8
Manes.08G004112 Manihot esculenta HOM05D007360 ORTHO05D008235 3.4e-45 186.8 402 37.6
THA.LOC104816327 Tarenaya hassleriana HOM05D007360 ORTHO05D008235 4.4e-45 186.4 284 43.7
Manes.08G004125 Manihot esculenta HOM05D007360 ORTHO05D008235 5.8e-45 186.0 398 37.2
Sopen00g009140 Solanum pennellii HOM05D007360 ORTHO05D008235 1.3e-44 184.9 266 46.2
VMungo0720G0507 Vigna mungo HOM05D007360 ORTHO05D008235 1.7e-44 184.5 255 47.5
Ah.08g211880 Amaranthus hybridus HOM05D007360 ORTHO05D008235 8.3e-44 182.2 279 46.2
Lalb_Chr21g0314721 Lupinus albus HOM05D007360 ORTHO05D008235 1.1e-43 181.8 285 44.9
Manes.08G004130 Manihot esculenta HOM05D007360 ORTHO05D008235 3.2e-43 180.3 368 38.0
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 3.5e-42 176.8 431 36.7
Lj1g0018826 Lotus japonicus HOM05D007360 ORTHO05D008235 7.8e-42 175.6 229 47.6
AL3G20950 Arabidopsis lyrata HOM05D007360 ORTHO05D008235 1.0e-41 175.3 422 37.7
Manes.08G004118 Manihot esculenta HOM05D007360 ORTHO05D008235 1.7e-41 174.5 428 41.8
Sabra06G0102600 Salix brachista HOM05D007360 ORTHO05D008235 2.3e-41 174.1 413 36.8
BolC1t05436H Brassica oleracea HOM05D007360 ORTHO05D008235 5.1e-41 172.9 438 35.6
BraA01t04285Z Brassica rapa HOM05D007360 ORTHO05D008235 5.1e-41 172.9 434 38.2
Thhalv10020860m.g Eutrema salsugineum HOM05D007360 ORTHO05D008235 5.6e-40 169.5 284 44.7
Manes.05G196900 Manihot esculenta HOM05D007360 ORTHO05D008235 5.6e-40 169.5 268 44.0
AT3G09730 Arabidopsis thaliana HOM05D007360 ORTHO05D008235 7.3e-40 169.1 441 35.1
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 7.3e-40 169.1 281 43.4
Sp3g08070 Schrenkiella parvula HOM05D007360 ORTHO05D008235 7.3e-40 169.1 440 38.2
A01p42170 Brassica napus HOM05D007360 ORTHO05D008235 5.8e-37 159.5 425 36.9
Carub.0003s0882 Capsella rubella HOM05D007360 ORTHO05D008235 9.9e-37 158.7 441 34.5
DCAR_020845 Daucus carota HOM05D007360 ORTHO05D008235 1.3e-36 158.3 243 43.2
CSS0042376 Camellia sinensis var. sinensis HOM05D007360 ORTHO05D008235 1.5e-32 144.8 326 37.7
ECA233G0563 Erigeron canadensis HOM05D007360 ORTHO05D008235 1.5e-32 144.8 248 39.9
CARHR084150 Cardamine hirsuta HOM05D007360 ORTHO05D008235 4.3e-32 143.3 442 35.7
Aqoxy4G03227 Aquilegia oxysepala HOM05D007360 ORTHO05D008235 3.1e-30 137.1 261 39.8
MD04G1105400 Malus domestica HOM05D007360 ORTHO05D008235 2.0e-29 134.4 158 51.9
Sed0020725 Sechium edule HOM05D007360 ORTHO05D008235 2.2e-28 131.0 316 35.8
MSTRG.10303 Avicennia marina HOM05D007360 ORTHO05D008235 8.4e-28 129.0 311 35.7
Manes.08G004119 Manihot esculenta HOM05D007360 ORTHO05D008235 4.6e-26 123.2 275 36.4
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 6.0e-26 122.9 86 74.4
Phvul.001G175350 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 1.7e-25 121.3 221 38.9
MD12G1122600 Malus domestica HOM05D007360 ORTHO05D008235 2.2e-20 104.4 111 55.9
Aa31LG3G2160 Aethionema arabicum HOM05D007360 ORTHO05D008235 3.9e-17 93.6 211 39.3
HanXRQChr02g0051971 Helianthus annuus HOM05D007360 ORTHO05D008235 5.8e-13 79.7 279 30.8
Actinidia10518 Actinidia chinensis HOM05D005497 ORTHO05D006733 2.1e-10 71.2 249 28.5
SEGI_31561 Sequoiadendron giganteum HOM05D007360 ORTHO05D008235 2.1e-10 71.2 263 28.5
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 2.7e-10 70.9 267 30.7
PGR044G0919 Punica granatum HOM05D005497 ORTHO05D006733 2.7e-10 70.9 247 30.8
TAR625G1494 Trochodendron aralioides HOM05D005497 ORTHO05D006733 2.7e-10 70.9 239 28.9
Oeu030218.3 Olea europaea HOM05D005497 ORTHO05D006733 7.9e-10 69.3 253 30.4
vmacro11245 Vaccinium macrocarpon HOM05D005497 ORTHO05D006733 3.0e-09 67.4 249 30.1
ClCG05G016330 Citrullus lanatus HOM05D005497 ORTHO05D006733 3.9e-09 67.0 239 27.2
Haze_21422 Corylus avellana HOM05D005497 ORTHO05D006733 8.7e-09 65.9 268 30.2
Glyma.04G061200 Glycine max HOM05D005497 ORTHO05D006733 1.1e-08 65.5 255 27.8
MELO3C016964.2 Cucumis melo HOM05D005497 ORTHO05D006733 1.5e-08 65.1 243 26.3
Sed0001000 Sechium edule HOM05D005497 ORTHO05D006733 1.5e-08 65.1 244 25.8
HanXRQChr02g0051981 Helianthus annuus HOM05D007360 ORTHO05D008235 1.9e-08 64.7 131 38.9
Manes.09G079705 Manihot esculenta HOM05D007360 ORTHO05D008235 2.5e-08 64.3 53 66.0
VMungo1309G2451 Vigna mungo HOM05D005497 ORTHO05D006733 4.3e-08 63.5 257 27.2
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 7.4e-08 62.8 243 29.2
Oeu018558.1 Olea europaea HOM05D007360 ORTHO05D008235 9.6e-08 62.4 110 38.2
Medtr3g106030 Medicago truncatula HOM05D005497 ORTHO05D006733 1.3e-07 62.0 244 28.3
Phvul.009G087300 Phaseolus vulgaris HOM05D005497 ORTHO05D006733 1.3e-07 62.0 256 25.8
Nitab4.5_0002964g0010 Nicotiana tabacum HOM05D005497 ORTHO05D006733 1.6e-07 61.6 259 28.6
Rhsim02G0213400 Rhododendron simsii HOM05D005497 ORTHO05D006733 1.6e-07 61.6 252 28.2
Actinidia22292 Actinidia chinensis HOM05D005497 ORTHO05D006733 2.1e-07 61.2 254 26.0
TWI32G0158 Tripterygium wilfordii HOM05D005497 ORTHO05D006733 2.1e-07 61.2 241 28.6
Hund20189 Selenicereus undatus HOM05D007360 ORTHO05D008235 2.8e-07 60.8 54 50.0
arahy.Tifrunner.gnm1.ann1.F9G1S6 Arachis hypogaea HOM05D005497 ORTHO05D006733 3.7e-07 60.5 258 27.9
Glyma.06G061800 Glycine max HOM05D005497 ORTHO05D006733 3.7e-07 60.5 238 26.9
Gorai.010G118600 Gossypium raimondii HOM05D005497 ORTHO05D006733 3.7e-07 60.5 236 28.8
Oeu063812.1 Olea europaea HOM05D007360 ORTHO05D008235 3.7e-07 60.5 110 38.2
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 4.8e-07 60.1 271 25.5
Hma1.2p1_1284F.1_g272900 Hydrangea macrophylla HOM05D005497 ORTHO05D006733 4.8e-07 60.1 242 27.7
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 6.2e-07 59.7 246 26.4
arahy.Tifrunner.gnm1.ann1.FJBE5X Arachis hypogaea HOM05D005497 ORTHO05D006733 8.2e-07 59.3 258 27.9
Gohir.D06G103600 Gossypium hirsutum HOM05D005497 ORTHO05D006733 8.2e-07 59.3 236 29.2
Nn2g12349 Nelumbo nucifera HOM05D005497 ORTHO05D006733 8.2e-07 59.3 243 28.0
Nn8g39876 Nelumbo nucifera HOM05D005497 ORTHO05D006733 1.4e-06 58.5 249 28.9
Ca_15775_v3 Cicer arietinum L. HOM05D005497 ORTHO05D006733 1.8e-06 58.2 236 28.0
Gorai.009G062600 Gossypium raimondii HOM05D005497 ORTHO05D006733 1.8e-06 58.2 238 31.1
Gohir.D05G061500 Gossypium hirsutum HOM05D005497 ORTHO05D006733 2.4e-06 57.8 238 31.1
Psat5g032840 Pisum sativum HOM05D005497 ORTHO05D006733 2.4e-06 57.8 230 28.3
Sopen02g018670 Solanum pennellii HOM05D005497 ORTHO05D006733 2.4e-06 57.8 256 27.3
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 2.4e-06 57.8 240 26.7
Gohir.A05G059400 Gossypium hirsutum HOM05D005497 ORTHO05D006733 3.1e-06 57.4 236 31.8
Nn8g39874 Nelumbo nucifera HOM05D005497 ORTHO05D006733 3.1e-06 57.4 251 28.7
Actinidia04644 Actinidia chinensis HOM05D007360 ORTHO05D008235 4.0e-06 57.0 64 53.1
Actinidia33720 Actinidia chinensis HOM05D007360 ORTHO05D008235 4.0e-06 57.0 64 53.1
Duzib168G1440 Durio zibethinus HOM05D005497 ORTHO05D006733 4.0e-06 57.0 242 26.4
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 5.3e-06 56.6 65 50.8
Actinidia28468 Actinidia chinensis HOM05D007360 ORTHO05D008235 5.3e-06 56.6 51 60.8
SalBow4G2467 Salvia bowleyana HOM05D005497 ORTHO05D006733 5.3e-06 56.6 228 24.6
Aqoxy2G02176 Aquilegia oxysepala HOM05D005497 ORTHO05D006733 6.9e-06 56.2 237 25.7
MSTRG.25841 Avicennia marina HOM05D005497 ORTHO05D006733 6.9e-06 56.2 236 27.1
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 6.9e-06 56.2 238 27.3
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 9.0e-06 55.8 262 24.8


User provided reference genes

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