Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 5.9e-259 897.1 490 100.0
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 3.3e-177 625.5 461 79.0
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 7.4e-177 624.4 461 76.6
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 4.8e-168 595.1 470 74.9
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 1.1e-167 594.0 458 74.9
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 2.0e-166 589.7 461 74.8
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 2.6e-166 589.3 474 74.5
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 1.5e-164 583.6 461 75.1
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 1.2e-163 580.5 462 74.7
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 2.7e-163 579.3 463 73.2
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 2.2e-160 569.7 461 74.0
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 3.7e-160 568.9 461 73.8
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 2.4e-159 566.2 462 71.9
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 5.3e-159 565.1 471 71.1
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 1.2e-158 563.9 461 72.2
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 1.6e-155 553.5 452 72.8
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 3.6e-155 552.4 460 72.0
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 6.1e-155 551.6 441 74.8
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 1.3e-152 543.9 458 72.1
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 2.2e-149 533.1 446 73.3
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 6.5e-149 531.6 446 73.3
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.5e-148 530.4 462 69.3
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 1.5e-148 530.4 462 70.1
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.7e-147 526.2 462 69.0
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 3.6e-147 525.8 458 70.3
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 4.7e-147 525.4 446 72.6
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.0e-146 522.3 462 68.4
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 5.2e-146 521.9 462 68.8
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 9.1e-143 511.1 466 67.8
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 3.5e-142 509.2 459 67.1
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 2.3e-141 506.5 460 68.3
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 1.5e-140 503.8 495 61.8
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.9e-140 503.4 386 76.9
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 1.0e-138 497.7 506 62.5
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 8.9e-138 494.6 436 69.7
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 8.9e-138 494.6 460 64.6
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 4.4e-137 492.3 459 65.6
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 9.2e-135 484.6 436 67.9
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 7.8e-134 481.5 458 64.8
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 1.0e-133 481.1 460 62.4
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 2.9e-133 479.6 432 68.1
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 5.0e-133 478.8 435 68.3
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 3.3e-132 476.1 465 64.1
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 5.6e-132 475.3 461 62.7
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 7.3e-132 474.9 418 69.1
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.2e-131 474.2 465 63.7
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 3.6e-131 472.6 460 62.0
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 8.0e-131 471.5 441 66.9
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 1.0e-130 471.1 459 63.8
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.4e-130 470.7 340 81.5
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 2.3e-130 469.9 418 68.9
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 8.9e-130 468.0 418 68.7
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 3.4e-129 466.1 441 66.9
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 5.8e-129 465.3 418 68.2
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 9.8e-129 464.5 460 64.1
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 4.9e-128 462.2 458 64.4
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 1.1e-127 461.1 436 64.9
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 4.1e-127 459.1 458 64.4
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 5.4e-127 458.8 449 62.8
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 9.2e-127 458.0 458 64.8
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 9.2e-127 458.0 446 65.9
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 1.6e-126 457.2 457 61.7
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 2.0e-126 456.8 441 65.5
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 2.0e-126 456.8 460 61.5
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.0e-125 454.5 449 62.4
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 5.0e-125 452.2 454 66.5
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 6.6e-125 451.8 461 65.1
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 2.1e-123 446.8 462 62.8
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 3.6e-123 446.0 450 65.6
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 1.8e-122 443.7 453 65.1
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 4.0e-122 442.6 447 60.2
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 6.8e-122 441.8 459 64.1
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 2.0e-121 440.3 462 63.9
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 2.6e-121 439.9 452 64.6
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 4.4e-121 439.1 433 63.5
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 5.8e-121 438.7 443 65.7
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 9.8e-121 438.0 463 63.3
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 2.9e-120 436.4 453 63.8
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 6.4e-120 435.3 461 61.8
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 6.4e-120 435.3 453 64.5
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 1.4e-119 434.1 456 62.9
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 1.4e-119 434.1 456 62.9
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 1.7e-117 427.2 434 64.1
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 2.3e-117 426.8 402 66.2
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 1.9e-116 423.7 408 66.9
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 3.3e-116 422.9 431 65.0
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 7.3e-116 421.8 446 62.6
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 7.3e-116 421.8 434 62.7
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 7.8e-110 401.7 398 64.6
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 8.6e-109 398.3 402 61.9
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 2.5e-108 396.7 382 64.7
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 3.3e-108 396.4 305 70.5
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 4.3e-108 396.0 462 57.8
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 1.7e-104 384.0 423 58.4
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.1e-103 381.3 434 59.0
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.1e-103 381.3 338 68.9
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 2.7e-102 376.7 331 71.9
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 2.7e-102 376.7 259 78.4
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 2.5e-100 370.2 449 55.2
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 9.6e-100 368.2 441 58.0
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 1.4e-98 364.4 321 69.2
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 3.1e-98 363.2 380 63.9
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 3.3e-92 343.2 258 70.9
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 1.3e-83 314.7 276 72.5
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.3e-75 288.1 203 77.3
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 1.5e-73 281.2 442 42.8
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 1.5e-73 281.2 235 68.5
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.6e-70 271.2 350 54.0
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 6.7e-69 265.8 325 53.2
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 1.0e-64 251.9 237 68.8
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 6.1e-54 216.1 336 46.7
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 8.8e-53 212.2 315 47.3
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 5.7e-52 209.5 334 48.5
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 9.7e-52 208.8 237 47.3
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 2.4e-50 204.1 135 79.3
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.9e-47 194.5 224 47.8
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 4.2e-39 166.8 123 72.4
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 3.0e-37 160.6 258 38.0
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 5.9e-33 146.4 236 39.8
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 4.7e-30 136.7 77 92.2
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.8e-29 132.9 160 57.5
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 9.2e-18 95.9 60 80.0
FAN28G0752 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.0e-13 80.5 126 42.1
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 1.3e-11 75.5 161 37.3
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 2.9e-11 74.3 166 33.7
unitig_736.g22595 Utricularia gibba HOM05D006243 ORTHO05D007688 7.3e-07 59.7 120 37.5


User provided reference genes

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